Ali Bashashati

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 17

Top Topics

Histopathology Images

Top Venues

ECCV Workshops (7)

Medical Image Anal.

Publications

Ali Khajegili Mirabadi, Graham Archibald, Amirali Darbandsari, Alberto Contreras-Sanz, Ramin Ebrahim Nakhli, Maryam Asadi, Allen Zhang, C. Blake Gilks, Peter Black, Gang Wang, Hossein Farahani, Ali Bashashati
GRASP: GRAph-Structured Pyramidal Whole Slide Image Representation. CoRR (2024)
Roozbeh Bazargani, Ladan Fazli, Martin E. Gleave, Larry Goldenberg, Ali Bashashati, Septimiu Salcudean
Multi-scale relational graph convolutional network for multiple instance learning in histopathology images. Medical Image Anal. 96 (2024)
Mayur Mallya, Ali Khajegili Mirabadi, Hossein Farahani, Ali Bashashati
Benchmarking Histopathology Foundation Models for Ovarian Cancer Bevacizumab Treatment Response Prediction from Whole Slide Images. CoRR (2024)
Ramin Nakhli, Allen W. Zhang, Hossein Farahani, Amirali Darbandsari, Elahe Shenasa, Sidney Thiessen, Katy Milne, Jessica McAlpine, Brad Nelson, C. Blake Gilks, Ali Bashashati
VOLTA: an Environment-Aware Contrastive Cell Representation Learning for Histopathology. CoRR (2023)
Puria Azadi, Jonathan Suderman, Ramin Nakhli, Katherine Rich, Maryam Asadi, Sonia Kung, Htoo Oo, Mira Keyes, Hossein Farahani, Calum MacAulay, Larry Goldenberg, Peter Black, Ali Bashashati
ALL-IN: ALocal GLobal Graph-Based DIstillatioN Model for Representation Learning of Gigapixel Histopathology Images With Application In Cancer Risk Assessment. MICCAI (6) (2023)
Ramin Nakhli, Allen W. Zhang, Ali Mirabadi, Katherine Rich, Maryam Asadi, C. Blake Gilks, Hossein Farahani, Ali Bashashati
CO-PILOT: Dynamic Top-Down Point Cloud with Conditional Neighborhood Aggregation for Multi-Gigapixel Histopathology Image Representation. ICCV (2023)
Ramin Nakhli, Puria Azadi Moghadam, Haoyang Mi, Hossein Farahani, Alexander Baras, C. Blake Gilks, Ali Bashashati
Sparse Multi-Modal Graph Transformer with Shared-Context Processing for Representation Learning of Giga-pixel Images. CVPR (2023)
Puria Azadi Moghadam, Sanne Van Dalen, Karina C. Martin, Jochen Lennerz, Stephen Yip, Hossein Farahani, Ali Bashashati
A Morphology Focused Diffusion Probabilistic Model for Synthesis of Histopathology Images. WACV (2023)
Ramin Nakhli, Puria Azadi Moghadam, Haoyang Mi, Hossein Farahani, Alexander Baras, C. Blake Gilks, Ali Bashashati
AMIGO: Sparse Multi-Modal Graph Transformer with Shared-Context Processing for Representation Learning of Giga-pixel Images. CoRR (2023)
Ramin Nakhli, Amirali Darbandsari, Hossein Farahani, Ali Bashashati
CCRL: Contrastive Cell Representation Learning. CoRR (2022)
Puria Azadi Moghadam, Sanne Van Dalen, Karina C. Martin, Jochen Lennerz, Stephen Yip, Hossein Farahani, Ali Bashashati
A Morphology Focused Diffusion Probabilistic Model for Synthesis of Histopathology Images. CoRR (2022)
Roozbeh Bazargani, Ladan Fazli, Larry Goldenberg, Martin E. Gleave, Ali Bashashati, Septimiu Salcudean
Multi-Scale Relational Graph Convolutional Network for Multiple Instance Learning in Histopathology Images. CoRR (2022)
Ramin Nakhli, Amirali Darbandsari, Hossein Farahani, Ali Bashashati
CCRL: Contrastive Cell Representation Learning. ECCV Workshops (7) (2022)
Yiping Wang, David Farnell, Hossein Farahani, Mitchell Nursey, Basile Tessier-Cloutier, Steven J. M. Jones, David G. Huntsman, C. Blake Gilks, Ali Bashashati
Classification of Epithelial Ovarian Carcinoma Whole-Slide Pathology Images Using Deep Transfer Learning. CoRR (2020)
Tyler Funnell, Allen W. Zhang, Diljot Grewal, Steven McKinney, Ali Bashashati, Yi Kan Wang, Sohrab P. Shah
Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models. PLoS Comput. Biol. 15 (2) (2019)
Hossein Bashashati, Rabab K. Ward, Ali Bashashati
Bayesian optimization of BCI parameters. CCECE (2016)
Hossein Bashashati, Rabab K. Ward, Ali Bashashati, Amr M. Mohamed
Neural Network Conditional Random Fields for Self-Paced Brain Computer Interfaces. ICMLA (2016)
Hossein Bashashati, Rabab K. Ward, Ali Bashashati
Hidden Markov Support Vector Machines for Self-Paced Brain Computer Interfaces. ICMLA (2015)
Jiarui Ding, Ali Bashashati, Andrew Roth, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Sam Aparicio, Sohrab P. Shah
Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data. Bioinform. 28 (2) (2012)
Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Sam Aparicio, Sohrab P. Shah
JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. Bioinform. 28 (7) (2012)
Mahsa T. Pourazad, Panos Nasiopoulos, Ali Bashashati
Random forests-based 2D-to-3D video conversion. ICECS (2010)
Greg Finak, Ali Bashashati, Ryan Remy Brinkman, Raphael Gottardo
Merging Mixture Components for Cell Population Identification in Flow Cytometry. Adv. Bioinformatics 2009 (2009)
Ali Bashashati, Ryan Remy Brinkman
A Survey of Flow Cytometry Data Analysis Methods. Adv. Bioinformatics 2009 (2009)
Ali Bashashati, Rabab K. Ward, Gary E. Birch
Towards Development of a 3-State Self-Paced Brain-Computer Interface. Comput. Intell. Neurosci. 2007 (2007)
Mehrdad Fatourechi, Ali Bashashati, Gary E. Birch, Rabab K. Ward
Automatic user customization for improving the performance of a self-paced brain interface system. Medical Biol. Eng. Comput. 44 (12) (2006)
Ali Bashashati, Rabab K. Ward, Gary E. Birch
Detection of Hand Extension Movements in the Context of a 3-State Asynchronous Brain Interface. ICASSP (5) (2006)
Ali Bashashati, Borna Noureddin, Rabab K. Ward, Peter D. Lawrence, Gary E. Birch
An experimental study to investigate the effects of a motion tracking electromagnetic sensor during EEG data acquisition. IEEE Trans. Biomed. Eng. 53 (3) (2006)
Mehrdad Fatourechi, Ali Bashashati, Rabab K. Ward, Gary E. Birch
A hybrid genetic algorithm approach for improving the performance of the LF-ASD brain computer interface. ICASSP (5) (2005)
Jaimie F. Borisoff, Steven G. Mason, Ali Bashashati, Gary E. Birch
Brain-computer interface design for asynchronous control applications: improvements to the LF-ASD asynchronous brain switch. IEEE Trans. Biomed. Eng. 51 (6) (2004)