Greg Finak

Publication Activity (10 Years)

Years Active: 2005-2021
Publications (10 Years): 4

Top Topics

Subspace Projections

Data Exploration

Gene Expression

Top Venues

PLoS Comput. Biol.

Publications

Evan Greene, Greg Finak, Leonard A. D'Amico, Nina Bhardwaj, Candice D. Church, Chihiro Morishima, Nirasha Ramchurren, Janis M. Taube, Paul T. Nghiem, Martin A. Cheever, Steven P. Fling, Raphael Gottardo
New interpretable machine-learning method for single-cell data reveals correlates of clinical response to cancer immunotherapy. Patterns 2 (12) (2021)
Evan Greene, Greg Finak, Raphael Gottardo
Selective Clustering Annotated using Modes of Projections. CoRR (2018)
Phu Van, Wenxin Jiang, Raphael Gottardo, Greg Finak
ggCyto: next generation open-source visualization software for cytometry. Bioinform. 34 (22) (2018)
Mehrnoush Malek, Mohammad Jafar Taghiyar, Lauren Chong, Greg Finak, Raphael Gottardo, Ryan Remy Brinkman
flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification. Bioinform. 31 (4) (2015)
Greg Finak, Jacob Frelinger, Wenxin Jiang, Evan W. Newell, John Ramey, Mark M. Davis, Spyros A. Kalams, Stephen C. De Rosa, Raphael Gottardo
OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis. PLoS Comput. Biol. 10 (8) (2014)
Andrew McDavid, Lucas Dennis, Patrick Danaher, Greg Finak, Michael Krouse, Alice Wang, Philippa Webster, Joseph Beechem, Raphael Gottardo
Modeling Bi-modality Improves Characterization of Cell Cycle on Gene Expression in Single Cells. PLoS Comput. Biol. 10 (7) (2014)
Andrew McDavid, Greg Finak, Pratip K. Chattopadhyay, Maria Dominguez, Laurie Lamoreaux, Steven S. Ma, Mario Roederer, Raphael Gottardo
Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments. Bioinform. 29 (4) (2013)
Greg Finak, Wenxin Jiang, Jorge Pardo, Adam Asare, Raphael Gottardo
QUAliFiER: An automated pipeline for quality assessment of gated flow cytometry data. BMC Bioinform. 13 (2012)
Greg Finak, Juan-Manuel Perez, Andrew Weng, Raphael Gottardo
Optimizing Transformations for Automated, High Throughput Analysis of Flow Cytometry Data. BMC Bioinform. 11 (2010)
Greg Finak, Ali Bashashati, Ryan Remy Brinkman, Raphael Gottardo
Merging Mixture Components for Cell Population Identification in Flow Cytometry. Adv. Bioinformatics 2009 (2009)
Greg Finak, N. Godin, Michael T. Hallett, François Pepin, Z. Rajabi, V. Srivastava, Z. Tang
BIAS: Bioinformatics Integrated Application Software. Bioinform. 21 (8) (2005)