Alexander Schug

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 18

Top Topics

Molecular Dynamics

Protein Sequences

Fitness Landscape

Scoring Function

Top Venues

PLoS Comput. Biol.

Publications

Fabrizio Pucci, Mehari B. Zerihun, Marianne Rooman, Alexander Schug
pycofitness - Evaluating the fitness landscape of RNA and protein sequences. Bioinform. 40 (2) (2024)
Oskar Taubert, Marie Weiel, Daniel Coquelin, Anis Farshian, Charlotte Debus, Alexander Schug, Achim Streit, Markus Götz
Massively Parallel Genetic Optimization Through Asynchronous Propagation of Populations. ISC (2023)
Oskar Taubert, Marie Weiel, Daniel Coquelin, Anis Farshian, Charlotte Debus, Alexander Schug, Achim Streit, Markus Götz
Massively Parallel Genetic Optimization through Asynchronous Propagation of Populations. CoRR (2023)
Julian Herold, Eric Behle, Jakob Rosenbauer, Jacopo Ferruzzi, Alexander Schug
Development of a scoring function for comparing simulated and experimental tumor spheroids. PLoS Comput. Biol. 19 (3) (2023)
Marie Weiel, Markus Götz, André Klein, Daniel Coquelin, Ralf Floca, Alexander Schug
Dynamic particle swarm optimization of biomolecular simulation parameters with flexible objective functions. Nat. Mach. Intell. 3 (8) (2021)
Arthur Voronin, Alexander Schug
pyrexMD: Workflow-Orientated Python Package for Replica Exchange Molecular Dynamics. J. Open Source Softw. 6 (68) (2021)
Ines Reinartz, Mona Sarter, Julia Otten, Henning Höfig, Martina Pohl, Alexander Schug, Andreas M. Stadler, Jörg Fitter
Structural Analysis of a Genetically Encoded FRET Biosensor by SAXS and MD Simulations. Sensors 21 (12) (2021)
Stefan Kesselheim, Andreas Herten, Kai Krajsek, Jan Ebert, Jenia Jitsev, Mehdi Cherti, Michael Langguth, Bing Gong, Scarlet Stadtler, Amirpasha Mozaffari, Gabriele Cavallaro, Rocco Sedona, Alexander Schug, Alexandre Strube, Roshni Kamath, Martin G. Schultz, Morris Riedel, Thomas Lippert
JUWELS Booster - A Supercomputer for Large-Scale AI Research. CoRR (2021)
Stefan Kesselheim, Andreas Herten, Kai Krajsek, Jan Ebert, Jenia Jitsev, Mehdi Cherti, Michael Langguth, Bing Gong, Scarlet Stadtler, Amirpasha Mozaffari, Gabriele Cavallaro, Rocco Sedona, Alexander Schug, Alexandre Strube, Roshni Kamath, Martin G. Schultz, Morris Riedel, Thomas Lippert
JUWELS Booster - A Supercomputer for Large-Scale AI Research. ISC Workshops (2021)
Mehari B. Zerihun, Fabrizio Pucci, Emanuel K. Peter, Alexander Schug
pydca v1.0: a comprehensive software for direct coupling analysis of RNA and protein sequences. Bioinform. 36 (7) (2020)
Marco Berghoff, Jakob Rosenbauer, Felix Hoffmann, Alexander Schug
Cells in Silico - introducing a high-performance framework for large-scale tissue modeling. BMC Bioinform. 21 (1) (2020)
Jakob Rosenbauer, Chengting Zhang, Benjamin Mattes, Ines Reinartz, Kyle Wedgwood, Simone Schindler, Claude Sinner, Steffen Scholpp, Alexander Schug
Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis. PLoS Comput. Biol. 16 (6) (2020)
Oskar Taubert, Markus Götz, Alexander Schug, Achim Streit
Loss Scheduling for Class-Imbalanced Image Segmentation Problems. ICMLA (2020)
Semih Turk, Alexander Schug, Reinhard Viga, Andreas Jupe, Holger Vogt
Optimization of the dielectric layer for electrowetting on dielectric. Integr. 67 (2019)
Oskar Taubert, Ines Reinartz, Henning Meyerhenke, Alexander Schug
diSTruct v1.0: generating biomolecular structures from distance constraints. Bioinform. 35 (24) (2019)
Marie Weiel, Ines Reinartz, Alexander Schug
Rapid interpretation of small-angle X-ray scattering data. PLoS Comput. Biol. 15 (3) (2019)
Michael Wegner, Oskar Taubert, Alexander Schug, Henning Meyerhenke
Maxent-Stress Optimization of 3D Biomolecular Models. ESA (2017)
Michael Wegner, Oskar Taubert, Alexander Schug, Henning Meyerhenke
Maxent-Stress Optimization of 3D Biomolecular Models. CoRR (2017)
Benjamin Lutz, Claude Sinner, Stefan Bozic, Ivan Kondov, Alexander Schug
Native structure-based modeling and simulation of biomolecular systems per mouse click. BMC Bioinform. 15 (2014)
Stefan Bozic, Jens Krüger, Claude Sinner, Benjamin Lutz, Alexander Schug, Ivan Kondov
Integration of eSBMTools into the MoSGrid Portal Using the gUSE Technology. IWSG (2014)
Benjamin Lutz, Claude Sinner, Geertje Heuermann, Abhinav Verma, Alexander Schug
eSBMTools 1.0: enhanced native structure-based modeling tools. Bioinform. 29 (21) (2013)
Abhinav Verma, Srinivasa M. Gopal, Alexander Schug, Jung S. Oh, Konstantin V. Klenin, Kyu H. Lee, Wolfgang Wenzel
Massively Parallel All Atom Protein Folding in a Single Day. PARCO (2007)
Thomas Herges, Alexander Schug, Wolfgang Wenzel
Protein Structure Prediction with Stochastic Optimization Methods: Folding and Misfolding the Villin Headpiece. ICCSA (3) (2004)