Marianne Rooman

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 14

Top Topics

Interactive Visualization

Protein Structure

Protein Sequences

Physicochemical Properties

Top Venues

Briefings Bioinform.

Publications

Fabrizio Pucci, Mehari B. Zerihun, Marianne Rooman, Alexander Schug
pycofitness - Evaluating the fitness landscape of RNA and protein sequences. Bioinform. 40 (2) (2024)
Gabriel Cia, Fabrizio Pucci, Marianne Rooman
Critical review of conformational B-cell epitope prediction methods. Briefings Bioinform. 24 (1) (2023)
Marianne Rooman, Fabrizio Pucci
Estimating the Vertical Ionization Potential of Single-Stranded DNA Molecules. J. Chem. Inf. Model. 63 (6) (2023)
Gabriel Cia, Jean Marc Kwasigroch, Marianne Rooman, Fabrizio Pucci
SpikePro: a webserver to predict the fitness of SARS-CoV-2 variants. Bioinform. 38 (18) (2022)
François Ancien, Fabrizio Pucci, Wim F. Vranken, Marianne Rooman
MutaFrame - an interpretative visualization framework for deleteriousness prediction of missense variants in the human exome. Bioinform. 38 (1) (2021)
Fabrizio Pucci, Martin Schwersensky, Marianne Rooman
AI challenges for predicting the impact of mutations on protein stability. CoRR (2021)
Sankar Basu, Simon S. Assaf, Fabian Teheux, Marianne Rooman, Fabrizio Pucci
BRANEart: Identify Stability Strength and Weakness Regions in Membrane Proteins. Frontiers Bioinform. 1 (2021)
Qingzhen Hou, Jean Marc Kwasigroch, Marianne Rooman, Fabrizio Pucci
SOLart: a structure-based method to predict protein solubility and aggregation. Bioinform. 36 (5) (2020)
Fabrizio Pucci, Katrien V. Bernaerts, Jean Marc Kwasigroch, Marianne Rooman
Quantification of biases in predictions of protein stability changes upon mutations. Bioinform. 34 (21) (2018)
Ibrahim Tanyalcin, Carla Al Assaf, Julien Ferté, François Ancien, Taushif Khan, Guillaume Smits, Marianne Rooman, Wim F. Vranken
Lexicon Visualization Library and JavaScript for Scientific Data Visualization. Comput. Sci. Eng. 20 (1) (2018)
Fabrizio Pucci, Jean Marc Kwasigroch, Marianne Rooman
SCooP: an accurate and fast predictor of protein stability curves as a function of temperature. Bioinform. 33 (21) (2017)
Georgios A. Dalkas, Marianne Rooman
SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence. BMC Bioinform. 18 (1) (2017)
Daniele Raimondi, Ibrahim Tanyalcin, Julien Ferté, Andrea M. Gazzo, Gabriele Orlando, Tom Lenaerts, Marianne Rooman, Wim F. Vranken
DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Daniele Raimondi, Andrea M. Gazzo, Marianne Rooman, Tom Lenaerts, Wim F. Vranken
Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects. Bioinform. 32 (12) (2016)
Fabrizio Pucci, Marianne Rooman
Stability Curve Prediction of Homologous Proteins Using Temperature-Dependent Statistical Potentials. PLoS Comput. Biol. 10 (7) (2014)
Yves Dehouck, Jean Marc Kwasigroch, Marianne Rooman, Dimitri Gilis
BeAtMuSiC: prediction of changes in protein-protein binding affinity on mutations. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Marie De Laet, Yves Dehouck, Dimitri Gilis, Marianne Rooman
Identification of protein stability patches that pinpoint key structural or functional sites. BCB (2012)
Jaroslav Albert, Marianne Rooman
Modeling Delays in State Transition of a Bistable Genetic Switch under the Influence of Extrinsic Noise. BIOINFORMATICS (2011)
Yves Dehouck, Jean Marc Kwasigroch, Dimitri Gilis, Marianne Rooman
PoPMuSiC 2.1 : a web server for the estimation of protein stability changes upon mutation and sequence optimality. BMC Bioinform. 12 (2011)
Alexandre Haye, Jaroslav Albert, Marianne Rooman
Gene Expression. CIBB (2010)
Tomasz Konopka, Marianne Rooman
Gene expression model (in)validation by Fourier analysis. BMC Syst. Biol. 4 (2010)
Yves Dehouck, Aline Grosfils, Benjamin Folch, Dimitri Gilis, Philippe Bogaerts, Marianne Rooman
Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0. Bioinform. 25 (19) (2009)
Jean Marc Kwasigroch, René Wintjens, Dimitri Gilis, Marianne Rooman
SODa: An Mn/Fe superoxide dismutase prediction and design server. BMC Bioinform. 9 (2008)
Benjamin Folch, Marianne Rooman, Yves Dehouck
Thermostability of Salt Bridges versus Hydrophobic Interactions in Proteins Probed by Statistical Potentials. J. Chem. Inf. Model. 48 (1) (2008)
Dimitri Gilis, Christophe Biot, Eric Buisine, Yves Dehouck, Marianne Rooman
Development of Novel Statistical Potentials Describing Cation-pi Interactions in Proteins and Comparison with Semiempirical and Quantum Chemistry Approaches. J. Chem. Inf. Model. 46 (2) (2006)
Jean Marc Kwasigroch, Marianne Rooman
Prelude&Fugue, predicting local protein structure, early folding regions and structural weaknesses. Bioinform. 22 (14) (2006)
Jean Marc Kwasigroch, Dimitri Gilis, Yves Dehouck, Marianne Rooman
PoPMuSiC, rationally designing point mutations in protein structures. Bioinform. 18 (12) (2002)