pycofitness - Evaluating the fitness landscape of RNA and protein sequences.
Fabrizio PucciMehari B. ZerihunMarianne RoomanAlexander SchugPublished in: Bioinform. (2024)
Keyphrases
- protein sequences
- fitness landscape
- secondary structure
- structural motifs
- multiple alignment
- nucleotide sequences
- computational biology
- genome sequences
- rna sequences
- evolutionary algorithm
- sequence analysis
- evolutionary computation
- protein structure
- biological sequences
- amino acids
- wider range
- search space
- protein classification
- multiple sequence alignment
- particle swarm optimizer
- amino acid sequences
- genetic algorithm
- protein secondary structure
- protein structure and function
- protein function
- string kernels
- protein structure prediction
- evolutionary search
- sequence databases
- sequence alignment
- artificial neural networks
- population size
- molecular biology
- protein folding
- crossover and mutation
- genome wide
- genetic algorithm ga
- simulated annealing
- multiple sequence alignments
- computational intelligence
- experimentally determined
- feature selection