Design space exploration of dataflow-based Smith-Waterman FPGA implementations.
Simone Casale BrunetEndri BezatiMarco MattavelliPublished in: SiPS (2017)
Keyphrases
- design space exploration
- smith waterman
- computer architecture
- parallel computing
- design space
- field programmable gate array
- design process
- hardware implementation
- subsequence matching
- biological sequences
- sequence alignment
- high performance computing
- database
- design methodology
- dynamic programming
- pairwise
- search algorithm
- databases