Identifying 3D Genome Organization in Diploid Organisms via Euclidean Distance Geometry.
Anastasiya BelyaevaKaie KubjasLawrence J. SunCaroline UhlerPublished in: SIAM J. Math. Data Sci. (2022)
Keyphrases
- euclidean distance
- human genome
- geodesic distance
- phylogenetic analysis
- image space
- feature vectors
- distance measure
- distance metric
- distance function
- similarity measure
- dimensionality reduction
- similarity measurement
- euclidean space
- data points
- dna sequences
- dynamic time warping
- fuzzy c means
- genome sequences
- high dimensional spaces
- metabolic pathways
- sequence data
- mahalanobis distance
- genome wide
- euclidean norm
- evolutionary history
- cosine distance
- nearest neighbor
- sequenced genomes