Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters.
Haidong LanYuandong ChanKai XuBertil SchmidtShaoliang PengWeiguo LiuPublished in: BMC Bioinform. (2016)
Keyphrases
- parallel algorithm
- sequence alignment
- comparative genomics
- parallel computation
- pairwise
- dynamic programming
- protein structure prediction
- parallel programming
- shared memory
- phylogenetic analysis
- amino acids
- gene clusters
- parallel version
- molecular biology
- gpu accelerated
- protein sequences
- hierarchical clustering
- cluster of workstations
- multiple sequence alignment
- gene expression analysis
- binding sites
- parallel implementations
- multiple alignment
- cluster analysis
- combinatorial search problems
- parallel computers
- similarity measure
- discovery of association rules
- protein structure
- biological data