Memory-efficient dynamic programming backtrace and pairwise local sequence alignment.
Lee Aaron NewbergPublished in: Bioinform. (2008)
Keyphrases
- sequence alignment
- memory efficient
- pairwise
- analog circuits
- dynamic programming
- multiple sequence alignment
- external memory
- gpu accelerated
- digital circuits
- multiple alignment
- iterative deepening
- neural network
- fault diagnosis
- phylogenetic analysis
- protein sequences
- similarity measure
- sequence databases
- fuzzy logic
- reinforcement learning
- artificial intelligence