PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure.
Wouter BoomsmaJes FrellsenTim HarderSandro BottaroKristoffer E. JohanssonPengfei TianKasper StovgaardChristian AndreettaSimon OlssonJan B. ValentinLubomir D. AntonovAnders S. ChristensenMikael BorgJan H. JensenKresten Lindorff-LarsenJesper Ferkinghoff-BorgThomas HamelryckPublished in: J. Comput. Chem. (2013)
Keyphrases
- monte carlo simulation
- markov chain
- monte carlo
- protein structure
- steady state
- gibbs sampling
- finite state
- transition probabilities
- random walk
- markov model
- markov process
- stationary distribution
- gibbs sampler
- monte carlo method
- markov chain monte carlo
- protein sequences
- state space
- molecular biology
- bayesian networks
- transition matrix
- data driven markov chain monte carlo