Fpga Acceleration for DNA Sequence Alignment.
Gabriel CaffarenaCarlos E. PedreiraCarlos CarrerasSlobodan BojanicOctavio Nieto-TaladrizPublished in: J. Circuits Syst. Comput. (2007)
Keyphrases
- sequence alignment
- binding sites
- sequence databases
- dna sequences
- comparative genomics
- pairwise
- smith waterman
- protein sequences
- biological sequences
- gene expression
- phylogenetic analysis
- hardware implementation
- dna computing
- field programmable gate array
- dynamic programming
- sequence data
- statistical significance
- sequence analysis
- gpu accelerated
- signal processing
- transcription factors
- high speed
- data acquisition
- low cost
- statistical analysis
- multiple sequence alignment
- hardware architecture
- genome sequences
- multiple alignment
- similarity measure
- feature selection