FPGA acceleration of the pair-HMMs forward algorithm for DNA sequence analysis.

Shanshan Ren Vlad Mihai Sima Zaid Al-Ars

Published in: BIBM (2015)

Keyphrases

sequence analysis
dynamic programming
preprocessing
hardware implementation
hidden markov models
computational biology
similarity measure
objective function
optimal solution
natural language processing
gene expression
distance metric
sequence data