An FM-Index Based High-Throughput Memory-Efficient FPGA Accelerator for Paired-End Short-Read Mapping.
Chung-Hsuan YangYi-Chung WuYen-Lung ChenChao-Hsi LeeJui-Hung HungChia-Hsiang YangPublished in: IEEE Trans. Biomed. Circuits Syst. (2023)
Keyphrases
- high throughput
- memory efficient
- field programmable gate array
- data acquisition
- microarray
- genome wide
- systems biology
- biological data
- external memory
- genomic data
- real time
- reference genome
- proteomic data
- high speed
- index structure
- rna seq
- embedded systems
- mass spectrometry data
- low cost
- mass spectrometry
- dna sequencing
- machine learning
- single nucleotide polymorphisms
- parallel computing
- low latency
- molecular biology
- hardware implementation
- b tree
- gene expression data
- data model
- data analysis
- data sets