Accelerated Seeding for Genome Sequence Alignment with Enumerated Radix Trees.
Arun SubramaniyanJack WaddenKush GoliyaNathan OzogXiao WuSatish NarayanasamyDavid T. BlaauwReetuparna DasPublished in: ISCA (2021)
Keyphrases
- sequence alignment
- phylogenetic analysis
- comparative genomics
- pairwise
- decision trees
- protein sequences
- multiple sequence alignment
- gpu accelerated
- floating point
- binding sites
- dynamic programming
- tree structure
- amino acids
- human genome
- multiple alignment
- phylogenetic trees
- gene clusters
- data sets
- sequence databases
- tree structures
- dna sequences