A GPU-CPU heterogeneous algorithm for NGS read alignment.
Ahmad Al KawamSunil P. KhatriAniruddha DattaPublished in: Int. J. Comput. Biol. Drug Des. (2018)
Keyphrases
- preprocessing
- learning algorithm
- high accuracy
- dynamic programming
- experimental evaluation
- optimal solution
- cost function
- np hard
- computational cost
- neural network
- gpu implementation
- parallel implementation
- times faster
- matching algorithm
- worst case
- computational complexity
- decision trees
- significant improvement
- search space
- particle swarm optimization
- detection algorithm
- similarity measure
- image alignment
- real time
- gpu accelerated