Protein Sequence Pattern Matching: Leveraging Application Specific Hardware Accelerators.
Sagi ManoleAmit GolanderShlomo WeissPublished in: IEEE Trans. Computers (2014)
Keyphrases
- pattern matching
- application specific
- protein sequences
- general purpose
- amino acids
- protein structure
- secondary structure
- string matching
- computation intensive
- pattern matching algorithm
- regular expressions
- structural motifs
- protein structure prediction
- protein secondary structure
- amino acid sequences
- protein folding
- databases
- protein function
- matching process
- sequence databases
- experimentally determined
- file system
- boyer moore
- physico chemical
- sequence alignment
- structural features
- wordnet
- search algorithm