Zongliang Yue

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 12

Top Topics

Web Server Logs

Functional Genomics

Top Venues

Frontiers Big Data

Nucleic Acids Res.

Publications

Fengyuan Huang, Robert S. Welner, Jake Y. Chen, Zongliang Yue
PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis. Frontiers Bioinform. 4 (2024)
Thanh Nguyen, Zongliang Yue, Radomir Slominski, Robert Welner, Jianyi Zhang, Jake Y. Chen
WINNER: A network biology tool for biomolecular characterization and prioritization. Frontiers Big Data 5 (2022)
Zongliang Yue, Nishant Batra, Hui-Chen Hsu, John Mountz, Jake Y. Chen
PAGER-CoV-Run: An online interactive analytical platform for COVID-19 functional genomic downstream analysis. AMIA (2021)
Thanh Nguyen, Samuel Bharti, Zongliang Yue, Christopher D. Willey, Jake Y. Chen
Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples. Frontiers Big Data 4 (2021)
Zongliang Yue, Eric Zhang, Clark Xu, Sunny Khurana, Nishant Batra, Son Do Hai Dang, James J. Cimino, Jake Y. Chen
PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies. Nucleic Acids Res. 49 (Database-Issue) (2021)
Thanh Nguyen, Samuel Bharti, Zongliang Yue, Christopher D. Willey, Jake Y. Chen
Corrigendum: Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples. Frontiers Big Data 4 (2021)
Zongliang Yue, Thanh Nguyen, Eric Zhang, Jianyi Zhang, Jake Y. Chen
WIPER: Weighted in-Path Edge Ranking for biomolecular association networks. Quant. Biol. 7 (4) (2019)
Zongliang Yue, Christopher D. Willey, Anita B. Hjelmeland, Jake Y. Chen
BEERE: a web server for biomedical entity expansion, ranking and explorations. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Zongliang Yue, Qi Zheng, Michael T. Neylon, Minjae Yoo, Jimin Shin, Zhiying Zhao, Aik Choon Tan, Jake Y. Chen
PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology. Nucleic Acids Res. 46 (Database-Issue) (2018)
Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Timothy Ratliff, Jake Y. Chen
"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Zongliang Yue, Itika Arora, Eric Y. Zhang, Vincent Laufer, S. Louis Bridges, Jake Y. Chen
Repositioning drugs by targeting network modules: a Parkinson's disease case study. BMC Bioinform. 18 (14) (2017)
Jake Y. Chen, Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Nafisa Bulsara, Itika Arora, Timothy Ratliff
Towards constructing "Super Gene Sets" regulatory networks. BIBM (2016)
Zongliang Yue, Madhura M. Kshirsagar, Thanh Nguyen, Chayaporn Suphavilai, Michael T. Neylon, Liugen Zhu, Timothy Ratliff, Jake Yue Chen
PAGER: constructing PAGs and new PAG-PAG relationships for network biology. Bioinform. 31 (12) (2015)
Hui Huang, Thanh Nguyen, Sara Ibrahim, Sandeep Shantharam, Zongliang Yue, Jake Y. Chen
DMAP: a connectivity map database to enable identification of novel drug repositioning candidates. BMC Bioinform. 16 (S13) (2015)
Zongliang Yue, Ping Wan, Zhan Xie, Jake Y. Chen
Computational Identification of De-Centric Genetic Regulatory Relationships from Functional Genomic Data. ISBRA (2014)
Zongliang Yue, Ping Wan, Hui Huang, Zhan Xie, Jake Yue Chen
SLDR: a computational technique to identify novel genetic regulatory relationships. BMC Bioinform. 15 (S-11) (2014)