Zlatko Trajanoski

Publication Activity (10 Years)

Years Active: 2002-2022
Publications (10 Years): 5

Top Topics

Mathematical Model

Transcription Factor Binding Sites

Top Venues

Briefings Bioinform.

Database J. Biol. Databases Curation

Publications

Dietmar Rieder, Georgios Fotakis, Markus Ausserhofer, Rene Geyeregger, Wolfgang Paster, Zlatko Trajanoski, Francesca Finotello
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction. Bioinform. 38 (4) (2022)
Gregor Sturm, Tamás Szabó, Georgios Fotakis, Marlene Haider, Dietmar Rieder, Zlatko Trajanoski, Francesca Finotello
Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data. Bioinform. 36 (18) (2020)
Georgios Fotakis, Dietmar Rieder, Marlene Haider, Zlatko Trajanoski, Francesca Finotello
NeoFuse: predicting fusion neoantigens from RNA sequencing data. Bioinform. 36 (7) (2020)
Elias Tappeiner, Francesca Finotello, Pornpimol Charoentong, Clemens Mayer, Dietmar Rieder, Zlatko Trajanoski
TIminer: NGS data mining pipeline for cancer immunology and immunotherapy. Bioinform. 33 (19) (2017)
Dietmar Rieder, Thomas Amort, Elisabeth Kugler, Alexandra Lusser, Zlatko Trajanoski
meRanTK: methylated RNA analysis ToolKit. Bioinform. 32 (5) (2016)
Andreas Dander, Matthias Baldauf, Michael Sperk, Stephan Pabinger, Benjamin Hiltpolt, Zlatko Trajanoski
Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages. BMC Bioinform. 15 (2014)
Stephan Pabinger, Andreas Dander, Maria Fischer, René Snajder, Michael Sperk, Mirjana Efremova, Birgit Krabichler, Michael R. Speicher, Johannes Zschocke, Zlatko Trajanoski
A survey of tools for variant analysis of next-generation genome sequencing data. Briefings Bioinform. 15 (2) (2014)
Dominik Schweiger, Zlatko Trajanoski, Stephan Pabinger
SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases. BMC Bioinform. 15 (2014)
Stephan Pabinger, René Snajder, Timo Hardiman, Michaela Willi, Andreas Dander, Zlatko Trajanoski
MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data. Database J. Biol. Databases Curation 2014 (2014)
René Snajder, Zlatko Trajanoski, Hubert Hackl
GPViz: dynamic visualization of genomic regions and variants affecting protein domains. Bioinform. 29 (17) (2013)
Ralf Gallasch, Mirjana Efremova, Pornpimol Charoentong, Hubert Hackl, Zlatko Trajanoski
Mathematical models for translational and clinical oncology. J. Clin. Bioinform. 3 (2013)
Stephan Pabinger, Robert Rader, Rasmus Agren, Jens Nielsen, Zlatko Trajanoski
MEMOSys: Bioinformatics platform for genome-scale metabolic models. BMC Syst. Biol. 5 (2011)
Gabriela Bindea, Bernhard Mlecnik, Hubert Hackl, Pornpimol Charoentong, Marie Tosolini, Amos Kirilovsky, Wolf-Herman Fridman, Franck Pagès, Zlatko Trajanoski, Jérôme Galon
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinform. 25 (8) (2009)
Stephan Pabinger, Gerhard G. Thallinger, René Snajder, Heiko Eichhorn, Robert Rader, Zlatko Trajanoski
QPCR: Application for real-time PCR data management and analysis. BMC Bioinform. 10 (2009)
Gernot Stocker, Maria Fischer, Dietmar Rieder, Gabriela Bindea, Simon Kainz, Michael Oberstolz, James G. McNally, Zlatko Trajanoski
iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis. BMC Bioinform. 10 (2009)
Gerhard G. Thallinger, Kerstin Baumgartner, Martin Pirklbauer, Martina Uray, Elke Pauritsch, Gabor Mehes, Charles R. Buck, Kurt Zatloukal, Zlatko Trajanoski
TAMEE: data management and analysis for tissue microarrays. BMC Bioinform. 8 (2007)
Jürgen Hartler, Gerhard G. Thallinger, Gernot Stocker, Alexander Sturn, Thomas R. Burkard, Erik Körner, Robert Rader, Andreas Schmidt, Karl Mechtler, Zlatko Trajanoski
MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data. BMC Bioinform. 8 (2007)
Johannes Rainer, Fátima Sánchez-Cabo, Gernot Stocker, Alexander Sturn, Zlatko Trajanoski
CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Michael Maurer, Robert Molidor, Alexander Sturn, Jürgen Hartler, Hubert Hackl, Gernot Stocker, Andreas Prokesch, Marcel Scheideler, Zlatko Trajanoski
MARS: Microarray analysis, retrieval, and storage system. BMC Bioinform. 6 (2005)
Barbara Di Camillo, Fátima Sánchez-Cabo, Gianna Toffolo, Sreekumaran K. Nair, Zlatko Trajanoski, Claudio Cobelli
A quantization method based on threshold optimization for microarray short time series. BMC Bioinform. 6 (S-4) (2005)
Bernhard Mlecnik, Marcel Scheideler, Hubert Hackl, Jürgen Hartler, Fátima Sánchez-Cabo, Zlatko Trajanoski
PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
C. Vogl, Fátima Sánchez-Cabo, Gernot Stocker, Simon J. Hubbard, Olaf Wolkenhauer, Zlatko Trajanoski
A fully Bayesian model to cluster gene-expression profiles. ECCB/JBI (2005)
J. S. Yu, S. Ongarello, R. Fiedler, X. W. Chen, Gianna Toffolo, Claudio Cobelli, Zlatko Trajanoski
Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data. Bioinform. 21 (10) (2005)
Roland Pieler, Fátima Sánchez-Cabo, Hubert Hackl, Gerhard G. Thallinger, Zlatko Trajanoski
ArrayNorm: comprehensive normalization and analysis of microarray data. Bioinform. 20 (12) (2004)
Gernot Stocker, Dietmar Rieder, Zlatko Trajanoski
ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster. Bioinform. 20 (5) (2004)
Alexander Sturn, Bernhard Mlecnik, Roland Pieler, Johannes Rainer, Thomas Truskaller, Zlatko Trajanoski
Client-Server environment for high-performance gene expression data analysis. Bioinform. 19 (6) (2003)
Elmar Trost, Hubert Hackl, Michael Maurer, Zlatko Trajanoski
Java editor for biological pathways. Bioinform. 19 (6) (2003)
Alexander Sturn, John Quackenbush, Zlatko Trajanoski
Genesis: cluster analysis of microarray data. Bioinform. 18 (1) (2002)
Georg Habeler, Klaus Natter, Gerhard G. Thallinger, Matthew E. Crawford, Sepp D. Kohlwein, Zlatko Trajanoski
YPL.db: the Yeast Protein Localization database. Nucleic Acids Res. 30 (1) (2002)