Francesca Finotello

Publication Activity (10 Years)

Years Active: 2012-2022
Publications (10 Years): 9

Top Topics

Features Extraction

Fractal Dimensions

Top Venues

Briefings Bioinform.

Biomed. Signal Process. Control.

Publications

Dietmar Rieder, Georgios Fotakis, Markus Ausserhofer, Rene Geyeregger, Wolfgang Paster, Zlatko Trajanoski, Francesca Finotello
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction. Bioinform. 38 (4) (2022)
Óscar Lapuente-Santana, Maisa van Genderen, Peter A. J. Hilbers, Francesca Finotello, Federica Eduati
Interpretable systems biomarkers predict response to immune-checkpoint inhibitors. Patterns 2 (8) (2021)
Gregor Sturm, Tamás Szabó, Georgios Fotakis, Marlene Haider, Dietmar Rieder, Zlatko Trajanoski, Francesca Finotello
Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data. Bioinform. 36 (18) (2020)
Georgios Fotakis, Dietmar Rieder, Marlene Haider, Zlatko Trajanoski, Francesca Finotello
NeoFuse: predicting fusion neoantigens from RNA sequencing data. Bioinform. 36 (7) (2020)
Gregor Sturm, Francesca Finotello, Florent Petitprez, Jitao David Zhang, Jan Baumbach, Wolf-Herman Fridman, Markus List, Tatsiana Aneichyk
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology. Bioinform. 35 (14) (2019)
Francesco Sambo, Francesca Finotello, Enrico Lavezzo, Giacomo Baruzzo, Giulia Masi, Elektra Peta, Marco Falda, Stefano Toppo, Luisa Barzon, Barbara Di Camillo
Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene. BMC Bioinform. 19 (1) (2018)
Francesca Finotello, Eleonora Mastrorilli, Barbara Di Camillo
Measuring the diversity of the human microbiota with targeted next-generation sequencing. Briefings Bioinform. 19 (4) (2018)
Fabio Scarpa, Maria Rubega, Mattia Zanon, Francesca Finotello, Anne-Sophie Sejling, Giovanni Sparacino
Hypoglycemia-induced EEG complexity changes in Type 1 diabetes assessed by fractal analysis algorithm. Biomed. Signal Process. Control. 38 (2017)
Elias Tappeiner, Francesca Finotello, Pornpimol Charoentong, Clemens Mayer, Dietmar Rieder, Zlatko Trajanoski
TIminer: NGS data mining pipeline for cancer immunology and immunotherapy. Bioinform. 33 (19) (2017)
Francesca Finotello, Fabio Scarpa, Mattia Zanon
EEG signal features extraction based on fractal dimension. EMBC (2015)
Francesca Finotello, Enrico Lavezzo, Luca Bianco, Luisa Barzon, Paolo Mazzon, Paolo Fontana, Stefano Toppo, Barbara Di Camillo
Reducing bias in RNA sequencing data: a novel approach to compute counts. BMC Bioinform. 15 (S-1) (2014)
Francesca Finotello, Enrico Lavezzo, Paolo Fontana, Denis Peruzzo, Alessandro Albiero, Luisa Barzon, Marco Falda, Barbara Di Camillo, Stefano Toppo
Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data. Briefings Bioinform. 13 (3) (2012)