Yuyan Ni

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 13

Top Topics

Information Bottleneck

Chemical Reaction

Multiple Sequence Alignments

Top Venues

Publications

Bowen Gao, Yinjun Jia, Yuanle Mo, Yuyan Ni, Wei-Ying Ma, Zhi-Ming Ma, Yanyan Lan
Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment. ICLR (2024)
Han Tang, Shikun Feng, Bicheng Lin, Yuyan Ni, Jingjing Liu, Wei-Ying Ma, Yanyan Lan
Contextual Molecule Representation Learning from Chemical Reaction Knowledge. CoRR (2024)
Bowen Gao, Minsi Ren, Yuyan Ni, Yanwen Huang, Bo Qiang, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan
Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion. CoRR (2024)
Shikun Feng, Yuyan Ni, Minghao Li, Yanwen Huang, Zhi-Ming Ma, Wei-Ying Ma, Yanyan Lan
UniCorn: A Unified Contrastive Learning Approach for Multi-view Molecular Representation Learning. CoRR (2024)
Yuyan Ni, Shikun Feng, Xin Hong, Yuancheng Sun, Wei-Ying Ma, Zhi-Ming Ma, Qiwei Ye, Yanyan Lan
Pre-training with Fractional Denoising to Enhance Molecular Property Prediction. CoRR (2024)
Qiying Yu, Yudi Zhang, Yuyan Ni, Shikun Feng, Yanyan Lan, Hao Zhou, Jingjing Liu
Multimodal Molecular Pretraining via Modality Blending. ICLR (2024)
Yuyan Ni, Shikun Feng, Wei-Ying Ma, Zhi-Ming Ma, Yanyan Lan
Sliced Denoising: A Physics-Informed Molecular Pre-Training Method. ICLR (2024)
Shikun Feng, Yuyan Ni, Yanyan Lan, Zhi-Ming Ma, Wei-Ying Ma
Fractional Denoising for 3D Molecular Pre-training. ICML (2023)
Bowen Gao, Yinjun Jia, Yuanle Mo, Yuyan Ni, Wei-Ying Ma, Zhiming Ma, Yanyan Lan
Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment. CoRR (2023)
Yuyan Ni, Shikun Feng, Wei-Ying Ma, Zhi-Ming Ma, Yanyan Lan
Sliced Denoising: A Physics-Informed Molecular Pre-Training Method. CoRR (2023)
Shikun Feng, Yuyan Ni, Yanyan Lan, Zhi-Ming Ma, Wei-Ying Ma
Fractional Denoising for 3D Molecular Pre-training. CoRR (2023)
Qiying Yu, Yudi Zhang, Yuyan Ni, Shikun Feng, Yanyan Lan, Hao Zhou, Jingjing Liu
Unified Molecular Modeling via Modality Blending. CoRR (2023)
Yuyan Ni, Yanyan Lan, Ao Liu, Zhiming Ma
Elastic Information Bottleneck. CoRR (2023)
Shufeng Zhou, Zhuoming Xu, Yuyan Ni, Haifei Zhang
R2RML Processor for Materializing RDF View of Relational Data: Algorithms and Experiments. IEEE WISA (2013)
Zhuoming Xu, Yuyan Ni, Wenjie He, Lili Lin, Qin Yan
Automatic extraction of OWL ontologies from UML class diagrams: a semantics-preserving approach. World Wide Web 15 (5-6) (2012)
Zhuoming Xu, Yuyan Ni, Lili Lin, Huajian Gu
A Semantics-Preserving Approach for Extracting OWL Ontologies from UML Class Diagrams. FGIT-DTA (2009)