Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment.
Bowen GaoYinjun JiaYuanle MoYuyan NiWei-Ying MaZhiming MaYanyan LanPublished in: CoRR (2023)
Keyphrases
- sequence alignment
- multiple sequence alignment
- protein structure alignment
- protein sequences
- remote homology detection
- amino acids
- protein structure
- contact map
- multiple sequence alignments
- multiple alignment
- protein folding
- image alignment
- subcellular localization
- psi blast
- pairwise
- molecular dynamics
- amino acid sequences
- protein structure prediction
- sequence analysis
- predicting protein
- ontology matching
- rna secondary structures
- protein interaction data
- mass spectrometry
- protein protein interactions
- dead end
- dynamic programming
- drug design
- protein interaction networks
- protein classification
- computational biology
- genetic algorithm