Yovani Marrero-Ponce

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 13

Top Topics

Membership Functions

Top Venues

J. Comput. Chem.

J. Cheminformatics

Publications

José Ramón Mora, Edgar Márquez, Noel Pérez-Pérez, Ernesto Contreras-Torres, Yunierkis Pérez-Castillo, Guillermín Agüero-Chapín, Felix Martinez-Rios, Yovani Marrero-Ponce, Stephen J. Barigye
Rethinking the applicability domain analysis in QSAR models. J. Comput. Aided Mol. Des. 38 (1) (2024)
Longendri Aguilera-Mendoza, Sebastián Ayala-Ruano, Felix Martinez-Rios, Edgar Chávez, César R. García-Jacas, Carlos A. Brizuela, Yovani Marrero-Ponce
: an open-source software to assist chemical space analysis of bioactive peptides and their functions using complex networks. Bioinform. 39 (8) (2023)
Osmel Martín, Yoelsy Leyva, José Suárez-Lezcano, Yunierkis Pérez-Castillo, Yovani Marrero-Ponce
From a coenzyme-like mechanism to homochirality. Biosyst. (2023)
Ernesto Contreras-Torres, Yovani Marrero-Ponce, Julio E. Terán, César R. García-Jacas, Carlos A. Brizuela, Juan Carlos Sánchez-Rodríguez
MuLiMs-MCoMPAs: A Novel Multiplatform Framework to Compute Tensor Algebra-Based Three-Dimensional Protein Descriptors. J. Chem. Inf. Model. 60 (2) (2020)
César R. García-Jacas, Yovani Marrero-Ponce, Ricardo Vivas-Reyes, José Suárez-Lezcano, Felix Martinez-Rios, Julio E. Terán, Longendri Aguilera-Mendoza
Distributed and multicore QuBiLS-MIDAS software v2.0: Computing chiral, fuzzy, weighted and truncated geometrical molecular descriptors based on tensor algebra. J. Comput. Chem. 41 (12) (2020)
César R. García-Jacas, Yovani Marrero-Ponce, Carlos A. Brizuela, José Suárez-Lezcano, Felix Martinez-Rios
Smoothed Spherical Truncation based on Fuzzy Membership Functions: Application to the Molecular Encoding. J. Comput. Chem. 41 (3) (2020)
Longendri Aguilera-Mendoza, Yovani Marrero-Ponce, Jesus A. Beltran, Roberto Tellez-Ibarra, Hugo A. Guillen-Ramirez, Carlos A. Brizuela
Graph-based data integration from bioactive peptide databases of pharmaceutical interest: toward an organized collection enabling visual network analysis. Bioinform. 35 (22) (2019)
César R. García-Jacas, Lisset Cabrera-Leyva, Yovani Marrero-Ponce, José Suárez-Lezcano, Fernando Cortés-Guzmán, Mario Pupo-Meriño, Ricardo Vivas-Reyes
Choquet integral-based fuzzy molecular characterizations: when global definitions are computed from the dependency among atom/bond contributions (LOVIs/LOEIs). J. Cheminformatics 10 (1) (2018)
José R. Valdés-Martiní, Yovani Marrero-Ponce, César R. García-Jacas, Karina Martínez-Mayorga, Stephen J. Barigye, Yasser Silveira Vaz d'Almeida, Hai Pham-The, Facundo Pérez-Giménez, Carlos A. Morell
QuBiLS-MAS, open source multi-platform software for atom- and bond-based topological (2D) and chiral (2.5D) algebraic molecular descriptors computations. J. Cheminformatics 9 (1) (2017)
Oscar Miguel Rivera-Borroto, José Manuel García de la Vega, Yovani Marrero-Ponce, Ricardo Grau
Relational Agreement Measures for Similarity Searching of Cheminformatic Data Sets. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (1) (2016)
César R. García-Jacas, Ernesto Contreras-Torres, Yovani Marrero-Ponce, Mario Pupo-Meriño, Stephen J. Barigye, Lisset Cabrera-Leyva
Examining the predictive accuracy of the novel 3D N-linear algebraic molecular codifications on benchmark datasets. J. Cheminformatics 8 (1) (2016)
Yasser B. Ruiz-Blanco, Waldo Paz, James Green, Yovani Marrero-Ponce
ProtDCal: A program to compute general-purpose-numerical descriptors for sequences and 3D-structures of proteins. BMC Bioinform. 16 (2015)
Longendri Aguilera-Mendoza, Yovani Marrero-Ponce, Roberto Tellez-Ibarra, Monica T. Llorente-Quesada, Jesús Salgado, Stephen J. Barigye, Jun Liu
Overlap and diversity in antimicrobial peptide databases: compiling a non-redundant set of sequences. Bioinform. 31 (15) (2015)
César R. García-Jacas, Yovani Marrero-Ponce, Liesner Acevedo-Martínez, Stephen J. Barigye, José R. Valdés-Martiní, Ernesto Contreras-Torres
QuBiLS-MIDAS: A parallel free-software for molecular descriptors computation based on multilinear algebraic maps. J. Comput. Chem. 35 (18) (2014)
Stephen J. Barigye, Yovani Marrero-Ponce, Yoan Martínez López, Francisco Torrens, Luis Manuel Artiles-Martínez, Ricardo W. Pino-Urias, Oscar Martínez Santiago
Relations frequency hypermatrices in mutual, conditional and joint entropy-based information indices. J. Comput. Chem. 34 (4) (2013)
Gerardo M. Casañola-Martín, Mahmud Tareq Hassan Khan, Huong Le-Thi-Thu, Yovani Marrero-Ponce, Ramón García-Domenech, Francisco Torrens, Antonio Rescigno
Retrained Classification of Tyrosinase Inhibitors and "In Silico" Potency Estimation by Using Atom-Type Linear Indices: A Powerful Tool for Speed up the Discovery of Leads. Int. J. Chemoinformatics Chem. Eng. 2 (2) (2012)
Yovani Marrero-Ponce, Oscar Martínez Santiago, Yoan Martínez López, Stephen J. Barigye, Francisco Torrens
Derivatives in discrete mathematics: a novel graph-theoretical invariant for generating new 2/3D molecular descriptors. I. Theory and QSPR application. J. Comput. Aided Mol. Des. 26 (11) (2012)
Oscar Miguel Rivera-Borroto, Yovani Marrero-Ponce, José Manuel García de la Vega, Ricardo del Corazón Grau-Ábalo
Comparison of Combinatorial Clustering Methods on Pharmacological Data Sets Represented by Machine Learning-Selected Real Molecular Descriptors. J. Chem. Inf. Model. 51 (12) (2011)
Yovani Marrero-Ponce, Alfredo Meneses-Marcel, Oscar Miguel Rivera-Borroto, Ramón García-Domenech, Jesús Vicente de Julián-Ortiz, Alina Montero-Torres, José Antonio Escario, Alicia Gómez Barrio, David Montero Pereira, Juan José Nogal, Ricardo Grau, Francisco Torrens, Christian Vogel, Vicente J. Arán
Bond-based linear indices in QSAR: computational discovery of novel anti-trichomonal compounds. J. Comput. Aided Mol. Des. 22 (8) (2008)
Juan A. Castillo-Garit, Yovani Marrero-Ponce, Francisco Torrens, Ramón García-Domenech, Vicente Romero-Zaldivar
Bond-based 3D-chiral linear indices: Theory and QSAR applications to central chirality codification. J. Comput. Chem. 29 (15) (2008)
Yoanna María Alvarez-Ginarte, Yovani Marrero-Ponce, José Alberto Ruiz-García, Luis Alberto Montero-Cabrera, José Manuel García de la Vega, Pedro Noheda Marin, Rachel Crespo-Otero, Francisco Torrens Zaragoza, Ramón García-Domenech
Applying pattern recognition methods plus quantum and physico-chemical molecular descriptors to analyze the anabolic activity of structurally diverse steroids. J. Comput. Chem. 29 (3) (2008)
Yovani Marrero-Ponce, Mahmud Tareq Hassan Khan, Gerardo M. Casañola-Martín, Arjumand Ather, Mukhlis N. Sultankhodzhaev, Ramón García-Domenech, Francisco Torrens, Richard Rotondo
approach for drug discovery: aiding decision-making in 'in silico' selection of new lead tyrosinase inhibitors. J. Comput. Aided Mol. Des. 21 (4) (2007)
Yovani Marrero-Ponce, Francisco Torrens, Ysaias J. Alvarado, Richard Rotondo
Bond-based global and local (bond, group and bond-type) quadratic indices and their applications to computer-aided molecular design, 1. QSPR studies of diverse sets of organic chemicals. J. Comput. Aided Mol. Des. 20 (10-11) (2006)
Yovani Marrero-Ponce, Juan A. Castillo-Garit
3D-chiral Atom, Atom-type, and Total Non-stochastic and Stochastic Molecular Linear Indices and their Applications to Central Chirality Codification. J. Comput. Aided Mol. Des. 19 (6) (2005)
Yovani Marrero-Ponce, Maité Iyarreta-Veitía, Alina Montero-Torres, Carlos Romero-Zaldivar, Carlos A. Brandt, Priscilla E. Ávila, Karin Kirchgatter, Yanetsy Machado
Ligand-Based Virtual Screening and in Silico Design of New Antimalarial Compounds Using Nonstochastic and Stochastic Total and Atom-Type Quadratic Maps. J. Chem. Inf. Model. 45 (4) (2005)
Yovani Marrero-Ponce
Linear Indices of the "Molecular Pseudograph's Atom Adjacency Matrix": Definition, Significance-Interpretation, and Application to QSAR Analysis of Flavone Derivatives as HIV-1 Integrase Inhibitors. J. Chem. Inf. Model. 44 (6) (2004)
Yovani Marrero-Ponce, Juan A. Castillo-Garit, Ervelio Olazabal, Hector S. Serrano, Alcidez Morales, Nilo Castañedo, Froylán Ibarra-Velarde, Alma Huesca-Guillen, Elisa Jorge, Arletys del Valle, Francisco Torrens, Eduardo A. Castro
Tomocomd-Cardd, a novel approach for computer-aided ' rational' drug design: I. Theoretical and experimental assessment of a promising method for computational screening and in silico design of new anthelmintic compounds. J. Comput. Aided Mol. Des. 18 (10) (2004)