Yan Cui

Publication Activity (10 Years)

Years Active: 1998-2019
Publications (10 Years): 7

Top Topics

Gene Expression

Feature Selection

Biological Pathways

Sequenced Genomes

Top Venues

Nucleic Acids Res.

Publications

Rahul Kumar Sevakula, Vikas Singh, Nishchal K. Verma, Chandan Kumar, Yan Cui
Transfer Learning for Molecular Cancer Classification Using Deep Neural Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (6) (2019)
Vikas Singh, Teena Sharma, Nishchal K. Verma, Yan Cui
Feature Ranking using Robust Fuzzy Score Function for Gene Expression Data. FUZZ-IEEE (2019)
Vikas Singh, Harsh Vardhan, Nishchal K. Verma, Yan Cui
Optimal Feature Selection using Fuzzy Combination of Feature Subset for Transcriptome Data. FUZZ-IEEE (2018)
Anindya Bhattacharya, Yan Cui
Systematic Prediction of the Impacts of Mutations in MicroRNA Seed Sequences. J. Integr. Bioinform. 14 (1) (2017)
Nishchal K. Verma, Esha Dutta, Yan Cui
Assessing the quality of biclusters using fuzzy biclustering index. Int. J. Data Min. Bioinform. 15 (4) (2016)
Anindya Bhattacharya, Yan Cui
SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions. Nucleic Acids Res. 44 (Database-Issue) (2016)
Vikas Singh, Nikhil Baranwal, Rahul Kumar Sevakula, Nishchal K. Verma, Yan Cui
Layerwise feature selection in Stacked Sparse Auto-Encoder for tumor type prediction. BIBM (2016)
Nishchal K. Verma, Esha Dutta, Yan Cui
Hausdorff distance and global silhouette index as novel measures for estimating quality of biclusters. BIBM (2015)
Anindya Bhattacharya, Yan Cui
miR2GO: comparative functional analysis for microRNAs. Bioinform. 31 (14) (2015)
Anindya Bhattacharya, Jesse D. Ziebarth, Yan Cui
PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways. Nucleic Acids Res. 42 (Database-Issue) (2014)
Anindya Bhattacharya, Jesse D. Ziebarth, Yan Cui
SomamiR: a database for somatic mutations impacting microRNA function in cancer. Nucleic Acids Res. 41 (Database-Issue) (2013)
Jesse D. Ziebarth, Anindya Bhattacharya, Yan Cui
Bayesian Network Webserver: a comprehensive tool for biological network modeling. Bioinform. 29 (21) (2013)
Jesse D. Ziebarth, Anindya Bhattacharya, Yan Cui
CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization. Nucleic Acids Res. 41 (Database-Issue) (2013)
Jesse D. Ziebarth, Anindya Bhattacharya, Anlong Chen, Yan Cui
PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits. Nucleic Acids Res. 40 (Database-Issue) (2012)
Jesse D. Ziebarth, Bao Li, Isao Miyairi, Yan Cui
infection. BMC Bioinform. 11 (S-4) (2010)
Nishchal K. Verma, Payal Gupta, Pooja Agrawal, Yan Cui
MRI brain image segmentation for spotting tumors using improved mountain clustering approach. AIPR (2009)
Nishchal K. Verma, Payal Gupta, Pooja Agrawal, Yan Cui
Fuzzy rule based unsupervised approach for salient gene extraction. AIPR (2009)
Nishchal K. Verma, Pooja Agrawal, Yan Cui
Fuzzy rule based unsupervised approach for gene saliency. BMC Bioinform. 10 (S-7) (2009)
Nishchal K. Verma, Payal Gupta, Pooja Agrawal, Madasu Hanmandlu, Shantaram Vasikarla, Yan Cui
Medical Image Segmentation Using Improved Mountain Clustering Approach. ITNG (2009)
Lei Bao, Mi Zhou, Yan Cui
CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators. Nucleic Acids Res. 36 (Database-Issue) (2008)
Lei Bao, Mi Zhou, Ligang Wu, Lu Lu, Dan Goldowitz, Robert W. Williams, Yan Cui
PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits. Nucleic Acids Res. 35 (Database-Issue) (2007)
Lei Bao, Yan Cui
Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information. Bioinform. 21 (10) (2005)
Lei Bao, Mi Zhou, Yan Cui
nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Mi Zhou, Yan Cui
GeneInfoViz: Constructing and visualizing gene relation networks. Silico Biol. 4 (3) (2004)
Hongqiang Li, Mi Zhou, Yan Cui
Ranking Gene Regulatory Network Models with Microarray Data and Bayesian Network. CASDMKM (2004)
Wing Hung Wong, Yan Cui, Run Sheng Chen
Torsional Relaxation for Biopolymers. J. Comput. Biol. 5 (4) (1998)