Wayne B. Hayes

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 11

Top Topics

Biological Networks

Simulated Annealing

Top Venues

IEEE Trans. Evol. Comput.

Publications

Shiyue Rong, Weisheng Wang, Viet Ly, Pasha Khosravi, William C. Wu, Jing Chen, Wayne B. Hayes
Multi-SANA: Comparing Measures of Topological Similarity for Multiple Network Alignment. IEEE Trans. Evol. Comput. 26 (5) (2022)
Huy Pham, Emile R. Shehada, Shawna Stahlheber, Kushagra Pandey, Wayne B. Hayes
No Cell Left behind: Automated, Stochastic, Physics-Based Tracking of Every Cell in a Dense, Growing Colony. Algorithms 15 (2) (2022)
Sridevi Maharaj, Taotao Qian, Zarin Ohiba, Wayne B. Hayes
Common Neighbors Extension of the Sticky Model for PPI Networks Evaluated by Global and Local Graphlet Similarity. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (1) (2021)
Wayne B. Hayes
Exact p-values for global network alignments via combinatorial analysis of shared GO terms. CoRR (2020)
Marianna Milano, Wayne B. Hayes, Pierangelo Veltri, Mario Cannataro, Pietro Hiram Guzzi
SL-GLAlign: improving local alignment of biological networks through simulated annealing. Netw. Model. Anal. Health Informatics Bioinform. 9 (1) (2020)
Sridevi Maharaj, Zarin Ohiba, Wayne B. Hayes
Comparing Different Graphlet Measures for Evaluating Network Model Fits to BioGRID PPI Networks. AlCoB (2019)
Sridevi Maharaj, Brennan Tracy, Wayne B. Hayes
BLANT - fast graphlet sampling tool. Bioinform. 35 (24) (2019)
Marianna Milano, Wayne B. Hayes, Pierangelo Veltri, Mario Cannataro, Pietro Hiram Guzzi
SL-GLAlign: Improving the Local Alignment of Biological Networks through Simulated Annealing. BCB (2018)
Wayne B. Hayes, Nil Mamano
SANA NetGO: a combinatorial approach to using Gene Ontology (GO) terms to score network alignments. Bioinform. 34 (8) (2018)
Nil Mamano, Wayne B. Hayes
SANA: simulated annealing far outperforms many other search algorithms for biological network alignment. Bioinform. 33 (14) (2017)
Adib Hassan, Po-Chien Chung, Wayne B. Hayes
Graphettes: Constant-time determination of graphlet and orbit identity including (possibly disconnected) graphlets up to size 8. CoRR (2017)
Shyam Srinivasan, Jia Sheng Hu, D. Spencer Currle, Ernest S. Fung, Wayne B. Hayes, Arthur D. Lander, Edwin S. Monuki
A BMP-FGF Morphogen Toggle Switch Drives the Ultrasensitive Expression of Multiple Genes in the Developing Forebrain. PLoS Comput. Biol. 10 (2) (2014)
Wayne B. Hayes, Kai Sun, Natasa Przulj
Graphlet-based measures are suitable for biological network comparison. Bioinform. 29 (4) (2013)
Darren R. Davis, Wayne B. Hayes
Automated quantitative description of spiral galaxy arm-segment structure. CVPR (2012)
Alexandre Goldsztejn, Wayne B. Hayes, Pieter Collins
Tinkerbell Is Chaotic. SIAM J. Appl. Dyn. Syst. 10 (4) (2011)
Oleksii Kuchaiev, Aleksandar Stevanovic, Wayne B. Hayes, Natasa Przulj
GraphCruch 2: Software tool for network modeling, alignment and clustering. BMC Bioinform. 12 (2011)
Natasa Przulj, Oleksii Kuchaiev, Aleksandar Stevanovic, Wayne B. Hayes
Geometric Evolutionary Dynamics of Protein Interaction Networks. Pacific Symposium on Biocomputing (2010)
Yongkang Zhu, Wayne B. Hayes
Algorithm 908: Online Exact Summation of Floating-Point Streams. ACM Trans. Math. Softw. 37 (3) (2010)
Yongkang Zhu, Wayne B. Hayes
Correct Rounding and a Hybrid Approach to Exact Floating-Point Summation. SIAM J. Sci. Comput. 31 (4) (2009)
Wayne H. Enright, Wayne B. Hayes
Robust and reliable defect control for Runge-Kutta methods. ACM Trans. Math. Softw. 33 (1) (2007)
Wayne B. Hayes, Kenneth R. Jackson
A Fast Shadowing Algorithm for High-Dimensional ODE Systems. SIAM J. Sci. Comput. 29 (4) (2007)
Wayne B. Hayes, Kenneth R. Jackson
Rigorous Shadowing of Numerical Solutions of Ordinary Differential Equations by Containment. SIAM J. Numer. Anal. 41 (5) (2003)