Vinay Varadan

Publication Activity (10 Years)

Years Active: 2001-2022
Publications (10 Years): 6

Top Topics

Early Detection

Bayesian Framework

Gene Expression Data

Top Venues

Medical Imaging: Computer-Aided Diagnosis

Publications

Sirvan Khalighi, Peronne Joseph, Deepak Babu, Salendra Singh, Thomas Laframboise, Kishore Guda, Vinay Varadan
SYSMut: decoding the functional significance of rare somatic mutations in cancer. Briefings Bioinform. 23 (4) (2022)
Nathaniel Braman, Mohammed El Adoui, Manasa Vulchi, Paulette Turk, Maryam Etesami, Pingfu Fu, Kaustav Bera, Stylianos Drisis, Vinay Varadan, Donna Plecha, Mohammed Benjelloun, Jame Abraham, Anant Madabhushi
Deep learning-based prediction of response to HER2-targeted neoadjuvant chemotherapy from pre-treatment dynamic breast MRI: A multi-institutional validation study. CoRR (2020)
Niha G. Beig, Prateek Prasanna, Virginia Hill, Ruchika Verma, Vinay Varadan, Anant Madabhushi, Pallavi Tiwari
Radiogenomic characterization of response to chemo-radiation therapy in glioblastoma is associated with PI3K/AKT/mTOR and apoptosis signaling pathways. Medical Imaging: Computer-Aided Diagnosis (2019)
Niha G. Beig, Jay Patel, Prateek Prasanna, Sasan Partovi, Vinay Varadan, Anant Madabhushi, Pallavi Tiwari
Radiogenomic analysis of hypoxia pathway reveals computerized MRI descriptors predictive of overall survival in glioblastoma. Medical Imaging: Computer-Aided Diagnosis (2017)
Abolfazl Razi, Fatemeh Afghah, Vinay Varadan
Identifying gene subnetworks associated with clinical outcome in ovarian cancer using Network Based Coalition Game. EMBC (2015)
Abolfazl Razi, Nilanjana Banerjee, Nevenka Dimitrova, Vinay Varadan
Non-linear Bayesian framework to determine the transcriptional effects of cancer-associated genomic aberrations. EMBC (2015)
Vinay Varadan, Vartika Agrawal, Lyndsay N. Harris, Nevenka Dimitrova
Identification and characterization of gene fusions in breast cancer - A non-trivial pursuit. GlobalSIP (2013)
Vinay Varadan, Prateek Mittal, Charles J. Vaske, Stephen C. Benz
The Integration of Biological Pathway Knowledge in Cancer Genomics: A review of existing computational approaches. IEEE Signal Process. Mag. 29 (1) (2012)
Vinay Varadan, Angel Janevski, Sitharthan Kamalakaran, Nilanjana Banerjee, Nevenka Dimitrova, Lyndsay N. Harris
Statistical assessment of gene fusion detection algorithms using RNA Sequencing Data. SSP (2012)
Man-Hung Eric Tang, Vinay Varadan, Sid Kamalakaran, Michael Q. Zhang, Nevenka Dimitrova, James Hicks
A method for finding novel associations between genome-wide copy number and dna methylation patterns. GENSiPS (2011)
Angel Janevski, Vinay Varadan, Sitharthan Kamalakaran, Nilanjana Banerjee, Nevenka Dimitrova
Comparative copy number variation from whole genome sequencing. GENSiPS (2011)
Nilanjana Banerjee, Angel Janevski, Sitharthan Kamalakaran, Vinay Varadan, Robert Lucito, Nevenka Dimitrova
Pathway and network analysis probing epigenetic influences on chemosensitivity in ovarian cancer. GENSiPS (2010)
Angel Janevski, Sitharthan Kamalakaran, Nilanjana Banerjee, Vinay Varadan, Nevenka Dimitrova
PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment. BMC Bioinform. 10 (S-9) (2009)
Nevenka Dimitrova, Sitharthan Kamalakaran, Angel Janevski, Nilanjana Banerjee, Vinay Varadan, Robert Lucito, James Hicks
Tools for High Throughput Differential Methylation Study in Cancer. ICT Innovations (2009)
Nilanjana Banerjee, Vinay Varadan, Sitharthan Kamalakaran, Angel Janevski
Towards identification of thematic overlaps in gene sets. GENSiPS (2009)
Vinay Varadan, David M. Miller III, Dimitris Anastassiou
. ISMB (Supplement of Bioinformatics) (2006)
Vinay Varadan, Dimitris Anastassiou
Inference of Disease-Related Molecular Logic from Systems-Based Microarray Analysis. PLoS Comput. Biol. 2 (6) (2006)
Vinay Varadan, Henry Leung, Éloi Bossé
Dynamical model reconstruction and accurate prediction of power-pool time series. IEEE Trans. Instrum. Meas. 55 (1) (2006)
Philip M. Long, Vinay Varadan, Sarah Gilman, Mark Treshock, Rocco A. Servedio
Unsupervised evidence integration. ICML (2005)
Trent McConaghy, Henry Leung, Éloi Bossé, Vinay Varadan
Classification of audio radar signals using radial basis function neural networks. IEEE Trans. Instrum. Meas. 52 (6) (2003)
Henry Leung, Vinay Varadan
System Modeling and Design using Genetic Programming. IEEE ICCI (2002)
Vinay Varadan, Henry Leung
Chaotic system reconstruction from noisy time series measurements using improved least squares genetic programming. ISCAS (3) (2002)
Krishnamurthy Murali, Haiyang Yu, Vinay Varadan, Henry Leung
Secure communication using a chaos based signal encryption scheme. IEEE Trans. Consumer Electron. 47 (4) (2001)
Vinay Varadan, Henry Leung
Reconstruction of polynomial systems from noisy time-series measurements using genetic programming. IEEE Trans. Ind. Electron. 48 (4) (2001)
Vinay Varadan, Henry Leung
Design of piece-wise maps for spread spectrum communication using genetic programming. ISCAS (3) (2001)