Takehiro Shimoda

Publication Activity (10 Years)

Years Active: 2013-2015
Publications (10 Years): 0

Top Topics

Computational Approaches

Protein Interaction

Interaction Networks

Multiple Sequence Alignments

Top Venues

Source Code Biol. Medicine

BMC Syst. Biol.

Publications

Takehiro Shimoda, Shuji Suzuki, Masahito Ohue, Takashi Ishida, Yutaka Akiyama
Protein-protein docking on hardware accelerators: comparison of GPU and MIC architectures. BMC Syst. Biol. 9 (S-1) (2015)
Masahito Ohue, Takehiro Shimoda, Shuji Suzuki, Yuri Matsuzaki, Takashi Ishida, Yutaka Akiyama
MEGADOCK 4.0: an ultra-high-performance protein-protein docking software for heterogeneous supercomputers. Bioinform. 30 (22) (2014)
Takehiro Shimoda, Takashi Ishida, Shuji Suzuki, Masahito Ohue, Yutaka Akiyama
MEGADOCK-GPU: Acceleration of Protein-Protein Docking Calculation on GPUs. BCB (2013)
Yuri Matsuzaki, Nobuyuki Uchikoga, Masahito Ohue, Takehiro Shimoda, Toshiyuki Sato, Takashi Ishida, Yutaka Akiyama
MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments. Source Code Biol. Medicine 8 (2013)
Takehiro Shimoda, Masahito Ohue, Yuri Matsuzaki, Takayuki Fujiwara, Nobuyuki Uchikoga, Takashi Ishida, Yutaka Akiyama
The MEGADOCK project: Ultra-high-speed protein-protein interaction prediction tools on supercomputing environments. BCB (2013)
Masahito Ohue, Yuri Matsuzaki, Takehiro Shimoda, Takashi Ishida, Yutaka Akiyama
Improvement of Protein-Protein Interaction Prediction by Integrating Template-Based and Template-Free Protein Docking. BCB (2013)