MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments.
Yuri MatsuzakiNobuyuki UchikogaMasahito OhueTakehiro ShimodaToshiyuki SatoTakashi IshidaYutaka AkiyamaPublished in: Source Code Biol. Medicine (2013)
Keyphrases
- parallel computing
- high performance computing
- protein protein interactions
- protein interaction
- predicting protein
- parallel computers
- massively parallel
- wet lab
- computing systems
- computational methods
- graphics processing units
- functional modules
- computer systems
- software development
- software systems
- secondary structure
- multiple sequence alignments
- shared memory
- software developers
- high throughput
- protein interaction networks
- ppi networks
- protein complexes
- computational approaches
- gene ontology
- high precision
- structural properties
- data mining
- source code
- graphical models
- software projects