Sverker Holmgren

Publication Activity (10 Years)

Years Active: 1994-2017
Publications (10 Years): 2

Top Topics

Biochemical Networks

Systems Biology

Adaptive Systems

Top Venues

J. Comput. Biol.

Publications

Maya G. Neytcheva, Sverker Holmgren, Jonathan R. Bull, Ali Dorostkar, Anastasia Kruchinina, Dmitry A. Nikitenko, Nina Popova, Pavel A. Shvets, Alexey M. Teplov, Vadim Voevodin, Vladimir V. Voevodin
Multidimensional Performance and Scalability Analysis for Diverse Applications Based on System Monitoring Data. PPAM (1) (2017)
Behrang Mahjani, Salman Zubair Toor, Carl Nettelblad, Sverker Holmgren
A Flexible Computational Framework Using R and Map-Reduce for Permutation Tests of Massive Genetic Analysis of Complex Traits. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Malin Källén, Sverker Holmgren, Ebba Þóra Hvannberg
Impact of Code Refactoring Using Object-Oriented Methodology on a Scientific Computing Application. SCAM (2014)
Marcus Holm, Stefan Engblom, Anders Goude, Sverker Holmgren
Dynamic Autotuning of Adaptive Fast Multipole Methods on Hybrid Multicore CPU and GPU Systems. SIAM J. Sci. Comput. 36 (4) (2014)
Erwin Laure, Sverker Holmgren
Preface. Future Gener. Comput. Syst. 29 (8) (2013)
Carl Nettelblad, Behrang Mahjani, Sverker Holmgren
Fast and Accurate Detection of Multiple Quantitative Trait Loci. J. Comput. Biol. 20 (9) (2013)
Marcus Holm, Stefan Engblom, Anders Goude, Sverker Holmgren
Dynamic autotuning of adaptive fast multipole methods on hybrid multicore CPU \& GPU systems. CoRR (2013)
Andrej Andrejev, Salman Zubair Toor, Andreas Hellander, Sverker Holmgren, Tore Risch
Scientific Analysis by Queries in Extended SPARQL over a Scalable e-Science Data Store. e-Science (2013)
Per-Olov Östberg, Andreas Hellander, Brian Drawert, Erik Elmroth, Sverker Holmgren, Linda R. Petzold
Reducing Complexity in Management of eScience Computations. CCGRID (2012)
Salman Zubair Toor, Rainer Töebbicke, Maitane Zotes Resines, Sverker Holmgren
Investigating an Open Source Cloud Storage Infrastructure for CERN-specific Data Analysis. NAS (2012)
Per-Olov Östberg, Andreas Hellander, Brian Drawert, Erik Elmroth, Sverker Holmgren, Linda R. Petzold
Abstractions for Scaling eScience Applications to Distributed Computing Environments - A StratUm Integration Case Study in Molecular Systems Biology. BIOINFORMATICS (2012)
Katharina Kormann, Sverker Holmgren, Hans O. Karlsson
Global error control of the time-propagation for the Schrödinger equation with a time-dependent Hamiltonian. J. Comput. Sci. 2 (2) (2011)
Karl Ljungkvist, Martin Tillenius, David Black-Schaffer, Sverker Holmgren, Martin Karlsson, Elisabeth Larsson
Using Hardware Transactional Memory for High-Performance Computing. IPDPS Workshops (2011)
Salman Zubair Toor, Manivasakan Sabesan, Sverker Holmgren, Tore Risch
A Scalable Architecture for e-Science Data Management. eScience (2011)
Mahen Jayawardena, Carl Nettelblad, Salman Zubair Toor, Per-Olov Östberg, Erik Elmroth, Sverker Holmgren
A Grid-Enabled Problem Solving Environment for QTL Analysis in R. BICoB (2010)
Kateryna Mishchenko, Lars Rönnegård, Sverker Holmgren, Volodymyr Mishchenko
Assessing a multiple QTL search using the variance component model. Comput. Biol. Chem. 34 (1) (2010)
Marcus Holm, Sverker Holmgren
Efficiently Implementing Monte Carlo Electrostatics Simulations on Multicore Accelerators. PARA (2) (2010)
Katharina Kormann, Sverker Holmgren, Hans O. Karlsson
A Fourier-Coefficient Based Solution of an Optimal Control Problem in Quantum Chemistry. J. Optim. Theory Appl. 147 (3) (2010)
Magnus Gustafsson, Katharina Kormann, Sverker Holmgren
Communication-Efficient Algorithms for Numerical Quantum Dynamics. PARA (2) (2010)
Dan Wallin, Henrik Löf, Erik Hagersten, Sverker Holmgren
Reconsidering algorithms for iterative solvers in the multicore era. Int. J. Comput. Sci. Eng. 4 (4) (2009)
Carl Nettelblad, Sverker Holmgren, Lucy Crooks, Örjan Carlborg
cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov Models. BICoB (2009)
Kateryna Mishchenko, Sverker Holmgren, Lars Rönnegård
Newton-type methods for REML estimation in genetic analysis of quantitative traits. J. Comput. Methods Sci. Eng. 8 (1-2) (2008)
Markus Nordén, Henrik Löf, Jarmo Rantakokko, Sverker Holmgren
Dynamic Data Migration for Structured AMR Solvers. Int. J. Parallel Program. 35 (5) (2007)
Mahen Jayawardena, Sverker Holmgren
Grid-Enabling an Efficient Algorithm for Demanding Global Optimization Problems in Genetic Analysis. eScience (2007)
Henrik Brandén, Sverker Holmgren, Per Sundqvist
Discrete Fundamental Solution Preconditioning for Hyperbolic Systems of PDE. J. Sci. Comput. 30 (1) (2007)
Ann-Charlotte Berglund Sonnhammer, Sverker Holmgren
Bioinformatics and Computational Biology: Minisymposium Abstract. PARA (2006)
Dan Wallin, Henrik Löf, Erik Hagersten, Sverker Holmgren
Multigrid and Gauss-Seidel smoothers revisited: parallelization on chip multiprocessors. ICS (2006)
Mahen Jayawardena, Kajsa Ljungberg, Sverker Holmgren
Using Parallel Computing and Grid Systems for Genetic Mapping of Quantitative Traits. PARA (2006)
Markus Nordén, Sverker Holmgren, Michael Thuné
OpenMP versus MPI for PDE solvers based on regular sparse numerical operators. Future Gener. Comput. Syst. 22 (1-2) (2006)
Markus Nordén, Henrik Löf, Jarmo Rantakokko, Sverker Holmgren
Geographical Locality and Dynamic Data Migration for OpenMP Implementations of Adaptive PDE Solvers. IWOMP (2006)
Henrik Löf, Sverker Holmgren
affinity-on-next-touch: increasing the performance of an industrial PDE solver on a cc-NUMA system. ICS (2005)
Henrik Löf, Markus Nordén, Sverker Holmgren
Improving Geographical Locality of Data for Shared Memory Implementations of PDE Solvers. International Conference on Computational Science (2004)
Kajsa Ljungberg, Sverker Holmgren, Örjan Carlborg
Simultaneous search for multiple QTL using the global optimization algorithm DIRECT. Bioinform. 20 (12) (2004)
Henrik Johansson, Dan Wallin, Sverker Holmgren
Analyzing Advanced PDE Solvers Through Simulation. PARA (2004)
Sverker Holmgren, Anders Ynnerman
The Swedish National Graduate School in Scientific Computing (NGSSC). Future Gener. Comput. Syst. 19 (8) (2003)
Dan Wallin, Henrik Johansson, Sverker Holmgren
Cache Memory Behavior of Advanced PDE Solvers. PARCO (2003)
Kajsa Ljungberg, Sverker Holmgren, Örjan Carlborg
Efficient Algorithms for Quantitative Trait Loci Mapping Problems. J. Comput. Biol. 9 (6) (2002)
Sverker Holmgren, Markus Nordén, Jarmo Rantakokko, Dan Wallin
Performance of PDE solvers on a self-optimizing NUMA architecture. Parallel Algorithms Appl. 17 (4) (2002)
Markus Nordén, Sverker Holmgren, Michael Thuné
OpenMP versus MPI for PDE Solvers Based on Regular Sparse Numerical Operators. International Conference on Computational Science (3) (2002)
Sverker Holmgren, Dan Wallin
Performance of High-Accuracy PDE Solvers on a Self-Optimizing NUMA Architecture. Euro-Par (2001)
Henrik Brandén, Sverker Holmgren
Convergence Acceleration for Hyperbolic Systems Using Semicirculant Approximations. J. Sci. Comput. 14 (4) (1999)
Sverker Holmgren, Henrik Brandén, Erik Sterner
Convergence Acceleration for the Linearized Navier-Stokes Equations using Semicirculant Approximations. SIAM J. Sci. Comput. 21 (4) (1999)
Sverker Holmgren, Kurt Otto
Semicirculant Solvers and Boundary Corrections for First-Order Partial Differential Equations. SIAM J. Sci. Comput. 17 (3) (1996)
Sverker Holmgren, Kurt Otto
Semicirculant Preconditioners for First-Order Partial Differential Equations. SIAM J. Sci. Comput. 15 (2) (1994)