Sangmin Seo

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 24

Top Topics

Convolutional Network

Diffusion Model

Attention Mechanism

Top Venues

IEEE Trans. Parallel Distributed Syst.

Comput. Biol. Medicine

Publications

Seungyeon Choi, Sangmin Seo, Byung Ju Kim, Chihyun Park, Sanghyun Park
PIDiff: Physics informed diffusion model for protein pocket-specific 3D molecular generation. Comput. Biol. Medicine 180 (2024)
Jieun Lee, Sangmin Seo, Jonghwan Choi, Sanghyun Park
K2vTune: A workload-aware configuration tuning for RocksDB. Inf. Process. Manag. 61 (1) (2024)
Sangmin Seo, Jonghwan Choi, Seungyeon Choi, Jieun Lee, Chihyun Park, Sanghyun Park
Pseq2Sites: Enhancing protein sequence-based ligand binding-site prediction accuracy via the deep convolutional network and attention mechanism. Eng. Appl. Artif. Intell. 127 (Part A) (2024)
Seungyeon Choi, Sangmin Seo, Sanghyun Park
SPIN: SE(3)-Invariant Physics Informed Network for Binding Affinity Prediction. CoRR (2024)
Hyosoon Jang, Sangmin Seo, Sanghyun Park, Byung Ju Kim, Geon-Woo Choi, Jonghwan Choi, Chihyun Park
De novo drug design through gradient-based regularized search in information-theoretically controlled latent space. J. Comput. Aided Mol. Des. 38 (1) (2024)
Ju Yeon Seo, Kyeonghun Kim, Sangmin Seo, Sanghyun Park
DARK: Deep automatic Redis knobs tuning system depending on the persistence method. Expert Syst. Appl. 221 (2023)
Jonghwan Choi, Sangmin Seo, Sanghyun Park
COMA: efficient structure-constrained molecular generation using contractive and margin losses. J. Cheminformatics 15 (1) (2023)
Jonghwan Choi, Sangmin Seo, Seungyeon Choi, Shengmin Piao, Chihyun Park, Sung Jin Ryu, Byung Ju Kim, Sanghyun Park
ReBADD-SE: Multi-objective molecular optimisation using SELFIES fragment and off-policy self-critical sequence training. Comput. Biol. Medicine 157 (2023)
Shengmin Piao, Jonghwan Choi, Sangmin Seo, Sanghyun Park
SELF-EdiT: Structure-constrained molecular optimisation using SELFIES editing transformer. Appl. Intell. 53 (21) (2023)
Sangmin Seo, Jonghwan Choi, Sanghyun Park, Jaegyoon Ahn
Binding affinity prediction for protein-ligand complex using deep attention mechanism based on intermolecular interactions. BMC Bioinform. 22 (1) (2021)
Jonghwan Choi, Sangmin Seo, Jinuk Park, Sanghyun Park
MolBit: De novo Drug Design via Binary Representations of SMILES for avoiding the Posterior Collapse Problem. BIBM (2021)
Adrián Castelló, Rafael Mayo Gual, Sangmin Seo, Pavan Balaji, Enrique S. Quintana-Ortí, Antonio J. Peña
Analysis of Threading Libraries for High Performance Computing. IEEE Trans. Computers 69 (9) (2020)
Shintaro Iwasaki, Abdelhalim Amer, Kenjiro Taura, Sangmin Seo, Pavan Balaji
BOLT: Optimizing OpenMP Parallel Regions with User-Level Threads. PACT (2019)
Hanqi Guo, Wenbin He, Sangmin Seo, Han-Wei Shen, Emil M. Constantinescu, Chunhui Liu, Tom Peterka
Extreme-Scale Stochastic Particle Tracing for Uncertain Unsteady Flow Visualization and Analysis. IEEE Trans. Vis. Comput. Graph. 25 (9) (2019)
Sangmin Seo, Jonghwan Choi, Soon Kil Ahn, Kil Won Kim, Jaekwang Kim, Jaehyuck Choi, Jinho Kim, Jaegyoon Ahn
Prediction of GPCR-Ligand Binding Using Machine Learning Algorithms. Comput. Math. Methods Medicine 2018 (2018)
Sangmin Seo, Abdelhalim Amer, Pavan Balaji, Cyril Bordage, George Bosilca, Alex Brooks, Philip H. Carns, Adrián Castelló, Damien Genet, Thomas Hérault, Shintaro Iwasaki, Prateek Jindal, Laxmikant V. Kalé, Sriram Krishnamoorthy, Jonathan Lifflander, Huiwei Lu, Esteban Meneses, Marc Snir, Yanhua Sun, Kenjiro Taura, Peter H. Beckman
Argobots: A Lightweight Low-Level Threading and Tasking Framework. IEEE Trans. Parallel Distributed Syst. 29 (3) (2018)
Adrián Castelló, Sangmin Seo, Rafael Mayo, Pavan Balaji, Enrique S. Quintana-Ortí, Antonio J. Peña
GLTO: On the Adequacy of Lightweight Thread Approaches for OpenMP Implementations. ICPP (2017)
Adrián Castelló, Sangmin Seo, Rafael Mayo, Pavan Balaji, Enrique S. Quintana-Ortí, Antonio J. Peña
GLT: A Unified API for Lightweight Thread Libraries. Euro-Par (2017)
Hoang-Vu Dang, Sangmin Seo, Abdelhalim Amer, Pavan Balaji
Advanced Thread Synchronization for Multithreaded MPI Implementations. CCGrid (2017)
Ken Raffenetti, Abdelhalim Amer, Lena Oden, Charles Archer, Wesley Bland, Hajime Fujita, Yanfei Guo, Tomislav Janjusic, Dmitry Durnov, Michael Blocksome, Min Si, Sangmin Seo, Akhil Langer, Gengbin Zheng, Masamichi Takagi, Paul K. Coffman, Jithin Jose, Sayantan Sur, Alexander Sannikov, Sergey Oblomov, Michael Chuvelev, Masayuki Hatanaka, Xin Zhao, Paul F. Fischer, Thilina Rathnayake, Matthew Otten, Misun Min, Pavan Balaji
Why is MPI so slow?: analyzing the fundamental limits in implementing MPI-3.1. SC (2017)
Daniel A. Ellsworth, Tapasya Patki, Swann Perarnau, Sangmin Seo, Abdelhalim Amer, Judicael A. Zounmevo, Rinku Gupta, Kazutomo Yoshii, Henry Hoffmann, Allen D. Malony, Martin Schulz, Peter H. Beckman
Systemwide Power Management with Argo. IPDPS Workshops (2016)
Jintao Meng, Sangmin Seo, Pavan Balaji, Yanjie Wei, Bingqiang Wang, Shengzhong Feng
SWAP-Assembler 2: Optimization of De Novo Genome Assembler at Extreme Scale. ICPP (2016)
Adrián Castelló, Antonio J. Peña, Sangmin Seo, Rafael Mayo, Pavan Balaji, Enrique S. Quintana-Ortí
A Review of Lightweight Thread Approaches for High Performance Computing. CLUSTER (2016)
Philip H. Carns, John Jenkins, Charles D. Cranor, Scott Atchley, Sangmin Seo, Shane Snyder, Robert B. Ross
Enabling NVM for Data-Intensive Scientific Services. INFLOW@OSDI (2016)
Huiwei Lu, Sangmin Seo, Pavan Balaji
MPI+ULT: Overlapping Communication and Computation with User-Level Threads. HPCC/CSS/ICESS (2015)
Sangmin Seo, Robert Latham, Junchao Zhang, Pavan Balaji
Implementation and Evaluation of MPI Nonblocking Collective I/O. CCGRID (2015)
Wesley Bland, Huiwei Lu, Sangmin Seo, Pavan Balaji
Lessons Learned Implementing User-Level Failure Mitigation in MPICH. CCGRID (2015)
Jintao Meng, Yanjie Wei, Sangmin Seo, Pavan Balaji
SWAP-Assembler 2: Scalable Genome Assembler towards Millions of Cores - Practice and Experience. CCGRID (2015)
Thanh Tuan Dao, Jungwon Kim, Sangmin Seo, Bernhard Egger, Jaejin Lee
A Performance Model for GPUs with Caches. IEEE Trans. Parallel Distributed Syst. 26 (7) (2015)
Jin-A. Hong, Sangmin Seo, Namgi Kim, Byoung-Dai Lee
A study of secure data transmissions in mobile cloud computing from the energy consumption side. ICOIN (2013)
Sangmin Seo, Jun Lee, Gangwon Jo, Jaejin Lee
Automatic OpenCL work-group size selection for multicore CPUs. PACT (2013)
Choonki Jang, Jun Lee, Sangmin Seo, Jaejin Lee
An automatic code overlaying technique for multicores with explicitly-managed memory hierarchies. CGO (2012)
Jungwon Kim, Sangmin Seo, Jun Lee, Jeongho Nah, Gangwon Jo, Jaejin Lee
SnuCL: an OpenCL framework for heterogeneous CPU/GPU clusters. ICS (2012)
Jungwon Kim, Sangmin Seo, Jun Lee, Jeongho Nah, Gangwon Jo, Jaejin Lee
OpenCL as a unified programming model for heterogeneous CPU/GPU clusters. PPOPP (2012)
Junghyun Kim, Sangmin Seo, Jaejin Lee
An efficient software shared virtual memory for the single-chip cloud computer. APSys (2011)
Sangmin Seo, Gangwon Jo, Jaejin Lee
Performance characterization of the NAS Parallel Benchmarks in OpenCL. IISWC (2011)
Jungwon Kim, Sangmin Seo, Jun Lee, Jeongho Nah, Gangwon Jo, Jaejin Lee
OpenCL as a Programming Model for GPU Clusters. LCPC (2011)
Sangmin Seo, Junghyun Kim, Jaejin Lee
SFMalloc: A Lock-Free and Mostly Synchronization-Free Dynamic Memory Allocator for Manycores. PACT (2011)
Jun Lee, Jungwon Kim, Junghyun Kim, Sangmin Seo, Jaejin Lee
An OpenCL Framework for Homogeneous Manycores with No Hardware Cache Coherence. PACT (2011)
Jaejin Lee, Jun Lee, Sangmin Seo, Jungwon Kim, Seungkyun Kim, Zehra Sura
COMIC++: A software SVM system for heterogeneous multicore accelerator clusters. HPCA (2010)
Jaejin Lee, Jungwon Kim, Sangmin Seo, Seungkyun Kim, Jung-Ho Park, Honggyu Kim, Thanh Tuan Dao, Yongjin Cho, Sung Jong Seo, Seung Hak Lee, Seung Mo Cho, Hyo Jung Song, Sang-Bum Suh, Jong-Deok Choi
An OpenCL framework for heterogeneous multicores with local memory. PACT (2010)
Jun Lee, Sangmin Seo, Jaejin Lee
A software-SVM-based transactional memory for multicore accelerator architectures with local memory. PACT (2010)
Sangmin Seo, Jaejin Lee, Zehra Sura
Design and implementation of software-managed caches for multicores with local memory. HPCA (2009)
Jaejin Lee, Sangmin Seo, Chihun Kim, Junghyun Kim, Posung Chun, Zehra Sura, Jungwon Kim, Sangyong Han
COMIC: a coherent shared memory interface for cell be. PACT (2008)