Salvador Eugenio C. Caoili

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 9

Top Topics

Protein Folding

Immune Response

Distributional Clustering

Top Venues

Adv. Bioinformatics

Publications

Salvador Eugenio C. Caoili
Capturing Solvent-System Effects in B-Cell Epitope Prediction with the HAPTIC3/HEPTAD2 User Toolkit (HUT2). BCB (2023)
Salvador Eugenio C. Caoili
B-cell epitope prediction for antipeptide paratopes with the HAPTIC2/HEPTAD user toolkit (HUT). BCB (2022)
Salvador Eugenio C. Caoili
Beyond B-Cell Epitopes: Curating Positive Data on Antipeptide Paratope Binding to Support Development of Computational Tools for Vaccine Design and Other Translational Applications. BCB (2020)
Salvador Eugenio C. Caoili
Toward a Sequence-Based Physicochemical Approach to Variable-Length B-Cell Epitope Prediction for Antipeptide Paratopes Recognizing Flexibly Disordered Targets: Insights Drawn from Protein Folding Modeled as Polymer Collapse. BCB (2019)
Salvador Eugenio C. Caoili
Interpreting Negative Data on Antipeptide Paratope Binding to Support Development of B-Cell Epitope Prediction for Vaccine Design and Other Translational Applications. BCB (2018)
Salvador Eugenio C. Caoili
Development of a Polymer-Theoretic Approach to Describing Constraints on Reactions Between Antipeptide Antibodies and Intrinsically Disordered Peptide Antigens: Implications for B-Cell Epitope Prediction. BCB (2017)
Salvador Eugenio C. Caoili
Expressing Redundancy among Linear-Epitope Sequence Data Based on Residue-Level Physicochemical Similarity in the Context of Antigenic Cross-Reaction. Adv. Bioinformatics 2016 (2016)
Salvador Eugenio C. Caoili
Kinetic and Affinity Constraints on Reactions Between Antihapten Antibodies and Nonpeptidic B-Cell Epitopes: Implications for Predicting Antibody-Mediated Modulation of Pharmacokinetics and Pharmacodynamics. BCB (2016)
Salvador Eugenio C. Caoili
Analogy-based entropic similarity between observations and/or predictions (AESOP): an entropically weighted information-theoretic measure for benchmarking computational accuracy. BCB (2015)
Salvador Eugenio C. Caoili
An integrative framework for structure-based prediction of biological effects mediated by antipeptide antibodies. BCB (2014)
Salvador Eugenio C. Caoili
Defining Functional Redundancy of Epitope Data as Potential Antigenic Cross-Reactivity. BCB (2013)
Salvador Eugenio C. Caoili
Using quantitative dose-response data to benchmark B-cell epitope prediction for antipeptide antibodies. BCB (2012)
Salvador Eugenio C. Caoili
On the Meaning of Affinity Limits in B-Cell Epitope Prediction for Antipeptide Antibody-Mediated Immunity. Adv. Bioinformatics 2012 (2012)
Salvador Eugenio C. Caoili
Affinity limits in B-cell epitope prediction for immunity mediated by antipeptide antibodies. BCB (2011)
Salvador Eugenio C. Caoili
B-cell epitope prediction for peptide-based vaccine design: towards a paradigm of biological outcomes. BCB (2010)