Toward a Sequence-Based Physicochemical Approach to Variable-Length B-Cell Epitope Prediction for Antipeptide Paratopes Recognizing Flexibly Disordered Targets: Insights Drawn from Protein Folding Modeled as Polymer Collapse.
Salvador Eugenio C. CaoiliPublished in: BCB (2019)
Keyphrases
- variable length
- protein folding
- fixed length
- amino acids
- protein structure prediction
- protein sequences
- annealing algorithm
- secondary structure
- n gram
- bitstream
- amino acid sequences
- major histocompatibility complex
- protein structure
- protein families
- binding peptides
- structural motifs
- protein function
- coding scheme
- data mining
- mhc class ii
- computational biology
- information extraction
- feature vectors
- evolutionary algorithm
- information retrieval
- global optimization
- high quality
- multiresolution
- probabilistic model
- coarse grained
- text mining
- text classification
- gene expression