Ruth Dannenfelser

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 4

Top Topics

Congestion Control

Knowledge Extraction

Biological Networks

Top Venues

Publications

Lechuan Li, Ruth Dannenfelser, Charlie Cruz, Vicky Yao
Enhancing Gene Set Analysis in Embedding Spaces: A Novel Best-Match Approach. RECOMB (2024)
Ruth Dannenfelser, Jeffrey Zhong, Ran Zhang, Vicky Yao
Into the Single Cell Multiverse: an End-to-End Dataset for Procedural Knowledge Extraction in Biomedical Texts. CoRR (2023)
Lechuan Li, Ruth Dannenfelser, Yu Zhu, Nathaniel Hejduk, Santiago Segarra, Vicky Yao
Joint embedding of biological networks for cross-species functional alignment. Bioinform. 39 (9) (2023)
Ruth Dannenfelser, Jeffrey Zhong, Ran Zhang, Vicky Yao
Into the Single Cell Multiverse: an End-to-End Dataset for Procedural Knowledge Extraction in Biomedical Texts. NeurIPS (2023)
Huilei Xu, Caroline Baroukh, Ruth Dannenfelser, Edward Y. Chen, Christopher M. Tan, Yan Kou, Yujin E. Kim, Ihor Lemischka, Avi Ma'ayan
ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells. Database J. Biol. Databases Curation 2013 (2013)
Christopher M. Tan, Edward Y. Chen, Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan
Network2Canvas: network visualization on a canvas with enrichment analysis. Bioinform. 29 (15) (2013)
Neil R. Clark, Ruth Dannenfelser, Christopher M. Tan, Michael E. Komosinski, Avi Ma'ayan
Sets2Networks: network inference from repeated observations of sets. BMC Syst. Biol. 6 (2012)
Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan
Genes2FANs: connecting genes through functional association networks. BMC Bioinform. 13 (2012)
Caroline Baroukh, Sherry L. Jenkins, Ruth Dannenfelser, Avi Ma'ayan
Genes2WordCloud: a quick way to identify biological themes from gene lists and free text. Source Code Biol. Medicine 6 (2011)
Ruth Dannenfelser, Alexander Lachmann, Mariola Szenk, Avi Ma'ayan
FNV: light-weight flash-based network and pathway viewer. Bioinform. 27 (8) (2011)
Amin R. Mazloom, Ruth Dannenfelser, Neil R. Clark, Arsen V. Grigoryan, Kathryn M. Linder, Timothy Cardozo, Julia C. Bond, Aislyn D. W. Boran, Ravi Iyengar, Anna Malovannaya, Rainer B. Lanz, Avi Ma'ayan
Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes. PLoS Comput. Biol. 7 (12) (2011)
Steven N. Steinway, Ruth Dannenfelser, Christopher D. Laucius, James E. Hayes, Sudhir Nayak
JCoDA: a tool for detecting evolutionary selection. BMC Bioinform. 11 (2010)