Neil R. Clark

Publication Activity (10 Years)

Years Active: 2011-2018
Publications (10 Years): 3

Top Topics

Gene Expression

Sequenced Genomes

Top Venues

BMC Syst. Biol.

Publications

Rachel Hodos, Ping Zhang, Hao-Chih Lee, Qiaonan Duan, Zichen Wang, Neil R. Clark, Avi Ma'ayan, Fei Wang, Brian A. Kidd, Jianying Hu, David A. Sontag, Joel Dudley
Cell-specific prediction and application of drug-induced gene expression . PSB (2018)
Avi Ma'ayan, Neil R. Clark
Large Collection of Diverse Gene Set Search Queries Recapitulate Known Protein-Protein Interactions and Gene-Gene Functional Associations. CoRR (2016)
Zichen Wang, Neil R. Clark, Avi Ma'ayan
Drug-induced adverse events prediction with the LINCS L1000 data. Bioinform. 32 (15) (2016)
Zichen Wang, Neil R. Clark, Avi Ma'ayan
Dynamics of the discovery process of protein-protein interactions from low content studies. BMC Syst. Biol. 9 (2015)
Neil R. Clark, Maciej Szymkiewicz, Zichen Wang, Caroline D. Monteiro, Matthew R. Jones, Avi Ma'ayan
Principle Angle Enrichment Analysis (PAEA): Dimensionally reduced multivariate gene set enrichment analysis tool. BIBM (2015)
Neil R. Clark, Kevin S. Hu, Axel S. Feldmann, Yan Kou, Edward Y. Chen, Qiaonan Duan, Avi Ma'ayan
The characteristic direction: a geometrical approach to identify differentially expressed genes. BMC Bioinform. 15 (2014)
Edward Y. Chen, Christopher M. Tan, Yan Kou, Qiaonan Duan, Zichen Wang, Gabriela Vaz Meirelles, Neil R. Clark, Avi Ma'ayan
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinform. 14 (2013)
Christopher M. Tan, Edward Y. Chen, Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan
Network2Canvas: network visualization on a canvas with enrichment analysis. Bioinform. 29 (15) (2013)
Yan Kou, Edward Y. Chen, Neil R. Clark, Qiaonan Duan, Christopher M. Tan, Avi Ma'ayan
ChEA2: Gene-Set Libraries from ChIP-X Experiments to Decode the Transcription Regulome. CD-ARES (2013)
Neil R. Clark, Ruth Dannenfelser, Christopher M. Tan, Michael E. Komosinski, Avi Ma'ayan
Sets2Networks: network inference from repeated observations of sets. BMC Syst. Biol. 6 (2012)
Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan
Genes2FANs: connecting genes through functional association networks. BMC Bioinform. 13 (2012)
Amin R. Mazloom, Ruth Dannenfelser, Neil R. Clark, Arsen V. Grigoryan, Kathryn M. Linder, Timothy Cardozo, Julia C. Bond, Aislyn D. W. Boran, Ravi Iyengar, Anna Malovannaya, Rainer B. Lanz, Avi Ma'ayan
Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes. PLoS Comput. Biol. 7 (12) (2011)