Genes2WordCloud: a quick way to identify biological themes from gene lists and free text.
Caroline BaroukhSherry L. JenkinsRuth DannenfelserAvi Ma'ayanPublished in: Source Code Biol. Medicine (2011)
Keyphrases
- free text
- gene expression
- biologically meaningful
- gene expression levels
- regulatory networks
- biological processes
- gene expression analysis
- microarray
- microarray expression data
- gene expression patterns
- gene ontology
- gene function
- gene expression data
- biological entities
- gene sets
- dna microarray
- structured data
- information extraction
- gene products
- microarray data
- gene regulation
- gene regulatory networks
- saccharomyces cerevisiae
- interaction networks
- gene ontology terms
- natural language processing
- semi structured
- gene selection
- genome scale
- protein protein interaction networks
- gene clusters
- systems biology
- related genes
- homo sapiens
- high throughput
- biological networks
- clinical guidelines
- biological data
- cell cycle
- escherichia coli
- cancer classification
- gene networks
- candidate genes
- comparative genomics
- transcription factors
- medical records
- gene expression profiles
- genome wide
- biological knowledge
- biomedical literature
- protein protein interactions
- rna seq
- biological systems
- protein interaction
- genome annotation
- microarray datasets
- relational databases
- biological information
- machine learning
- alternative splicing
- data mining
- databases