Robert Brijder

Publication Activity (10 Years)

Years Active: 2005-2022
Publications (10 Years): 25

Top Topics

Transitive Closure

Chemical Reaction

Relational Algebra

Top Venues

Electron. J. Comb.

Publications

Robert Brijder, Lorenzo Traldi
A characterization of circle graphs in terms of total unimodularity. Eur. J. Comb. 102 (2022)
Robert Brijder, Marc Gyssens, Jan Van den Bussche
On matrices and K-relations. Ann. Math. Artif. Intell. 90 (2) (2022)
Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche
DNAQL: a query language for DNA sticker complexes. Nat. Comput. 20 (1) (2021)
Robert Brijder, Marc Gyssens, Jan Van den Bussche
On Matrices and K-Relations. FoIKS (2020)
Robert Brijder, Hendrik Jan Hoogeboom
Counterexamples to a conjecture of Las Vergnas. Eur. J. Comb. 89 (2020)
Robert Brijder, Lorenzo Traldi
A Characterization of Circle Graphs in Terms of Multimatroid Representations. Electron. J. Comb. 27 (1) (2020)
Robert Brijder, Floris Geerts, Jan Van den Bussche, Timmy Weerwag
MATLANG: Matrix operations and their expressive power. SIGMOD Rec. 48 (1) (2019)
Robert Brijder, Marc Gyssens, Jan Van den Bussche
On matrices and K-relations. CoRR (2019)
Robert Brijder
Computing with chemical reaction networks: a tutorial. Nat. Comput. 18 (1) (2019)
Robert Brijder, Floris Geerts, Jan Van den Bussche, Timmy Weerwag
On the Expressive Power of Query Languages for Matrices. ACM Trans. Database Syst. 44 (4) (2019)
Robert Brijder
Computing with Chemical Reaction Networks: A Tutorial. CoRR (2018)
Robert Brijder, David Doty, David Soloveichik
Democratic, existential, and consensus-based output conventions in stable computation by chemical reaction networks. Nat. Comput. 17 (1) (2018)
Robert Brijder, Floris Geerts, Jan Van den Bussche, Timmy Weerwag
On the Expressive Power of Query Languages for Matrices. ICDT (2018)
Robert Brijder
Orienting transversals and transition polynomials of multimatroids. Adv. Appl. Math. 94 (2018)
Robert Brijder, Lulu Qian
Preface. Nat. Comput. 17 (4) (2018)
Robert Brijder
Sorting by Reversals and the Theory of 4-Regular Graphs. CoRR (2017)
Robert Brijder, Floris Geerts, Jan Van den Bussche, Timmy Weerwag
On the expressive power of query languages for matrices. CoRR (2017)
Robert Brijder
Sorting by reversals and the theory of 4-regular graphs. Theor. Comput. Sci. 701 (2017)
Robert Brijder, Lorenzo Traldi
Isotropic Matroids III: Connectivity. Electron. J. Comb. 24 (2) (2017)
Robert Brijder
Dominance and deficiency for Petri nets and chemical reaction networks. Nat. Comput. 16 (2) (2017)
Robert Brijder
Minimal output unstable configurations in chemical reaction networks and deciders. Nat. Comput. 15 (2) (2016)
Robert Brijder, Lorenzo Traldi
Isotropic Matroids II: Circle Graphs. Electron. J. Comb. 23 (4) (2016)
Robert Brijder, Lorenzo Traldi
Isotropic Matroids I: Multimatroids and Neighborhoods. Electron. J. Comb. 23 (4) (2016)
Robert Brijder, David Doty, David Soloveichik
Robustness of Expressivity in Chemical Reaction Networks. DNA (2016)
Robert Brijder, David Doty, David Soloveichik
Robustness of expressivity in chemical reaction networks. CoRR (2016)
Robert Brijder
Recombination faults in gene assembly in ciliates modeled using multimatroids. Theor. Comput. Sci. 608 (2015)
Robert Brijder
Dominance and T-Invariants for Petri Nets and Chemical Reaction Networks. DNA (2015)
Robert Brijder
Dominance and Deficiency for Petri Nets and Chemical Reaction Networks. CoRR (2015)
Robert Brijder
Output Stability and Semilinear Sets in Chemical Reaction Networks and Deciders. DNA (2014)
Robert Brijder, Hendrik Jan Hoogeboom
Graph Polynomials Motivated by Gene Rearrangements in Ciliates. CiE (2014)
Robert Brijder, Hendrik Jan Hoogeboom
Interlace polynomials for multimatroids and delta-matroids. Eur. J. Comb. 40 (2014)
Robert Brijder
Output Stability and Semilinear Sets in Chemical Reaction Networks and Deciders. CoRR (2014)
Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche
The DNA query language DNAQL. ICDT (2013)
Robert Brijder, Hendrik Jan Hoogeboom
Nullity and Loop Complementation for Delta-Matroids. SIAM J. Discret. Math. 27 (1) (2013)
Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche
Graph-theoretic formalization of hybridization in DNA sticker complexes. Nat. Comput. 12 (2) (2013)
Lorenzo Traldi, Robert Brijder, Hendrik Jan Hoogeboom
The Adjacency Matroid of a Graph. Electron. J. Comb. 20 (3) (2013)
Robert Brijder, Hendrik Blockeel
On the inference of non-confluent NLC graph grammars. J. Log. Comput. 23 (4) (2013)
Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche
A Type System for DNAQL. DNA (2012)
Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche
A comparison of graph-theoretic DNA hybridization models. Theor. Comput. Sci. 429 (2012)
Robert Brijder, Andrzej Ehrenfeucht, Grzegorz Rozenberg
Representing Reaction Systems by Trees. Computation, Physics and Beyond (2012)
Robert Brijder, Tero Harju, Hendrik Jan Hoogeboom
Pivots, determinants, and perfect matchings of graphs. Theor. Comput. Sci. 454 (2012)
Robert Brijder, Hendrik Jan Hoogeboom
Binary Symmetric Matrix Inversion Through Local Complementation. Fundam. Informaticae 116 (1-4) (2012)
Robert Brijder, Hendrik Blockeel
Characterizing Compressibility of Disjoint Subgraphs with NLC Grammars. LATA (2011)
Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche
Graph-Theoretic Formalization of Hybridization in DNA Sticker Complexes. DNA (2011)
Robert Brijder, Hendrik Jan Hoogeboom
The group structure of pivot and loop complementation on graphs and set systems. Eur. J. Comb. 32 (8) (2011)
Francesco Bernardini, Robert Brijder, Matteo Cavaliere, Giuditta Franco, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
On aggregation in multiset-based self-assembly of graphs. Nat. Comput. 10 (1) (2011)
Robert Brijder, Andrzej Ehrenfeucht, Michael G. Main, Grzegorz Rozenberg
A Tour of reaction Systems. Int. J. Found. Comput. Sci. 22 (7) (2011)
Robert Brijder, Andrzej Ehrenfeucht, Grzegorz Rozenberg
Reaction Systems with Duration. Computation, Cooperation, and Life (2011)
Robert Brijder, Andrzej Ehrenfeucht, Grzegorz Rozenberg
A Note on Causalities in Reaction Systems. Electron. Commun. Eur. Assoc. Softw. Sci. Technol. 30 (2010)
Robert Brijder, Hendrik Jan Hoogeboom
Maximal pivots on graphs with an application to gene assembly. Discret. Appl. Math. 158 (18) (2010)
Robert Brijder, Hendrik Jan Hoogeboom
Pivot and Loop Complementation on Graphs and Set Systems. TAMC (2010)
Robert Brijder, Hendrik Jan Hoogeboom
Combining overlap and containment for gene assembly in ciliates. Theor. Comput. Sci. 411 (6) (2010)
Robert Brijder, Miika Langille, Ion Petre
Extended strings and graphs for simple gene assembly. Theor. Comput. Sci. 411 (4-5) (2010)
Hendrik Blockeel, Robert Brijder
Non-Confluent NLC Graph Grammar Inference by Compressing Disjoint Subgraphs. CoRR (2009)
Robert Brijder, Hendrik Jan Hoogeboom
Maximal Pivots on Graphs with an Application to Gene Assembly CoRR (2009)
Robert Brijder, Hendrik Jan Hoogeboom
Perfectly quilted rectangular snake tilings. Theor. Comput. Sci. 410 (16) (2009)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
Reduction Graphs from Overlap Graphs for Gene Assembly in Ciliates. Int. J. Found. Comput. Sci. 20 (2) (2009)
Robert Brijder, Hendrik Jan Hoogeboom
Reality-and-Desire in Ciliates. Algorithmic Bioprocesses (2009)
Robert Brijder, Hendrik Jan Hoogeboom
The Group Structure of Pivot and Loop Complementation on Graphs and Set Systems CoRR (2009)
Robert Brijder, Hendrik Jan Hoogeboom
Nullity Invariance for Pivot and the Interlace Polynomial CoRR (2009)
Robert Brijder, Hendrik Jan Hoogeboom
Extending the Overlap Graph for Gene Assembly in Ciliates. LATA (2008)
Robert Brijder, Matteo Cavaliere, Agustin Riscos-Núñez, Grzegorz Rozenberg, Dragos Sburlan
Membrane systems with proteins embedded in membranes. Theor. Comput. Sci. 404 (1-2) (2008)
Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus
Strategies of loop recombination in ciliates. Discret. Appl. Math. 156 (10) (2008)
Robert Brijder, Hendrik Jan Hoogeboom
The fibers and range of reduction graphs in ciliates. Acta Informatica 45 (5) (2008)
Robert Brijder, Matteo Cavaliere, Agustin Riscos-Núñez, Grzegorz Rozenberg, Dragos Sburlan
Membrane Systems with Marked Membranes. Electron. Notes Theor. Comput. Sci. 171 (2) (2007)
Robert Brijder, Miika Langille, Ion Petre
A String-Based Model for Simple Gene Assembly. FCT (2007)
Robert Brijder, Hendrik Jan Hoogeboom
Extending the Overlap Graph for Gene Assembly in Ciliates CoRR (2007)
Francesco Bernardini, Robert Brijder, Grzegorz Rozenberg, Claudio Zandron
Multiset-Based Self-Assembly of Graphs. Fundam. Informaticae 75 (1-4) (2007)
Michael Muskulus, Daniela Besozzi, Robert Brijder, Paolo Cazzaniga, Sanne Houweling, Dario Pescini, Grzegorz Rozenberg
Cycles and communicating classes in membrane systems and molecular dynamics. Theor. Comput. Sci. 372 (2-3) (2007)
Robert Brijder, Hendrik Jan Hoogeboom
Characterizing Reduction Graphs for Gene Assembly in Ciliates. Developments in Language Theory (2007)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
How Overlap Determines the Macronuclear Genes in Ciliates CoRR (2007)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates. FCT (2007)
Robert Brijder, Hendrik Jan Hoogeboom
The Fibers and Range of Reduction Graphs in Ciliates CoRR (2007)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
Reducibility of Gene Patterns in Ciliates using the Breakpoint Graph CoRR (2006)
Robert Brijder, Matteo Cavaliere, Agustin Riscos-Núñez, Grzegorz Rozenberg, Dragos Sburlan
Communication Membrane Systems with Active Symports. J. Autom. Lang. Comb. 11 (3) (2006)
Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus
Strategies of Loop Recombination in Ciliates CoRR (2006)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
Reducibility of gene patterns in ciliates using the breakpoint graph. Theor. Comput. Sci. 356 (1-2) (2006)
Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus
Applicability of Loop Recombination in Ciliates Using the Breakpoint Graph. CompLife (2006)
Michael Muskulus, Robert Brijder
Complexity of bio-computation: symbolic dynamics in membrane systems. Int. J. Found. Comput. Sci. 17 (1) (2006)
Robert Brijder, Matteo Cavaliere, Agustin Riscos-Núñez, Grzegorz Rozenberg, Dragos Sburlan
Membrane Systems with External Control. Workshop on Membrane Computing (2006)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
The Breakpoint Graph in Ciliates. CompLife (2005)