Hendrik Jan Hoogeboom

ORCID

Publication Activity (10 Years)

Years Active: 1985-2024
Publications (10 Years): 13

Top Venues

Publications

Daniela Genova, Hendrik Jan Hoogeboom, Jetty Kleijn
Functional equivalence and a cover relation for reaction systems. Theor. Comput. Sci. 1004 (2024)
Jérôme Durand-Lose, Hendrik Jan Hoogeboom, Natasa Jonoska
Deterministic Non-cooperative Binding in Two-Dimensional Tile Assembly Systems Must Have Ultimately Periodic Paths. CoRR (2022)
Daniela Genova, Hendrik Jan Hoogeboom, Jetty Kleijn
Comparing reactions in reaction systems. Theor. Comput. Sci. 881 (2021)
Joost Engelfriet, Hendrik Jan Hoogeboom, Bart Samwel
XML navigation and transformation by tree-walking automata and transducers with visible and invisible pebbles. Theor. Comput. Sci. 850 (2021)
Daniela Genova, Hendrik Jan Hoogeboom, Zornitza Genova Prodanoff
Extracting reaction systems from function behavior. J. Membr. Comput. 2 (3) (2020)
Robert Brijder, Hendrik Jan Hoogeboom
Counterexamples to a conjecture of Las Vergnas. Eur. J. Comb. 89 (2020)
Daniela Genova, Hendrik Jan Hoogeboom, Natasa Jonoska
Companions and an Essential Motion of a Reaction System. Fundam. Informaticae 175 (1-4) (2020)
Jérôme Durand-Lose, Hendrik Jan Hoogeboom, Natasa Jonoska
Deterministic 2-Dimensional Temperature-1 Tile Assembly Systems Cannot Compute. CoRR (2019)
Joost Engelfriet, Hendrik Jan Hoogeboom, Bart Samwel
XML Navigation and Transformation by Tree-Walking Automata and Transducers with Visible and Invisible Pebbles. CoRR (2018)
Daniela Genova, Hendrik Jan Hoogeboom
Enforcing Regular Languages. Fundam. Informaticae 154 (1-4) (2017)
Daniela Genova, Hendrik Jan Hoogeboom, Natasa Jonoska
A graph isomorphism condition and equivalence of reaction systems. Theor. Comput. Sci. 701 (2017)
Daniela Genova, Hendrik Jan Hoogeboom
Finite Language Forbidding-Enforcing Systems. CiE (2017)
Hendrik Jan Hoogeboom, Walter A. Kosters, Jan N. van Rijn, Jonathan K. Vis
Acyclic Constraint Logic and Games. CoRR (2016)
Hendrik Jan Hoogeboom, Walter A. Kosters, Jan N. van Rijn, Jonathan K. Vis
Acyclic Constraint Logic and Games. J. Int. Comput. Games Assoc. 37 (1) (2014)
Robert Brijder, Hendrik Jan Hoogeboom
Graph Polynomials Motivated by Gene Rearrangements in Ciliates. CiE (2014)
Robert Brijder, Hendrik Jan Hoogeboom
Interlace polynomials for multimatroids and delta-matroids. Eur. J. Comb. 40 (2014)
Robert Brijder, Hendrik Jan Hoogeboom
Nullity and Loop Complementation for Delta-Matroids. SIAM J. Discret. Math. 27 (1) (2013)
Rudy van Vliet, Hendrik Jan Hoogeboom
A Minimal Normal Form for DNA Expressions. Fundam. Informaticae 123 (2) (2013)
Rudy van Vliet, Hendrik Jan Hoogeboom
Making DNA Expressions Minimal. Fundam. Informaticae 123 (2) (2013)
Lorenzo Traldi, Robert Brijder, Hendrik Jan Hoogeboom
The Adjacency Matroid of a Graph. Electron. J. Comb. 20 (3) (2013)
Linqiang Pan, Jun Wang, Hendrik Jan Hoogeboom
Spiking Neural P Systems with Astrocytes. Neural Comput. 24 (3) (2012)
Robert Brijder, Tero Harju, Hendrik Jan Hoogeboom
Pivots, determinants, and perfect matchings of graphs. Theor. Comput. Sci. 454 (2012)
Robert Brijder, Hendrik Jan Hoogeboom
Binary Symmetric Matrix Inversion Through Local Complementation. Fundam. Informaticae 116 (1-4) (2012)
Giorgio Ausiello, Hendrik Jan Hoogeboom, Juhani Karhumäki, Ion Petre, Arto Salomaa
Preface. Theor. Comput. Sci. 429 (2012)
Pierluigi Frisco, Hendrik Jan Hoogeboom
P Systems and Topology: Some Suggestions for Research. Int. J. Found. Comput. Sci. 22 (1) (2011)
Linqiang Pan, Jun Wang, Hendrik Jan Hoogeboom
Asynchronous Extended Spiking Neural P Systems with Astrocytes. Int. Conf. on Membrane Computing (2011)
Linqiang Pan, Jun Wang, Hendrik Jan Hoogeboom
Limited Asynchronous Spiking Neural P Systems. Fundam. Informaticae 110 (1-4) (2011)
Robert Brijder, Hendrik Jan Hoogeboom
The group structure of pivot and loop complementation on graphs and set systems. Eur. J. Comb. 32 (8) (2011)
Francesco Bernardini, Robert Brijder, Matteo Cavaliere, Giuditta Franco, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
On aggregation in multiset-based self-assembly of graphs. Nat. Comput. 10 (1) (2011)
Jun Wang, Hendrik Jan Hoogeboom, Linqiang Pan
Spiking Neural P Systems with Neuron Division. Int. Conf. on Membrane Computing (2010)
Robert Brijder, Hendrik Jan Hoogeboom
Maximal pivots on graphs with an application to gene assembly. Discret. Appl. Math. 158 (18) (2010)
Jun Wang, Hendrik Jan Hoogeboom, Linqiang Pan, Gheorghe Paun, Mario J. Pérez-Jiménez
Spiking Neural P Systems with Weights. Neural Comput. 22 (10) (2010)
Robert Brijder, Hendrik Jan Hoogeboom
Pivot and Loop Complementation on Graphs and Set Systems. TAMC (2010)
Robert Brijder, Hendrik Jan Hoogeboom
Combining overlap and containment for gene assembly in ciliates. Theor. Comput. Sci. 411 (6) (2010)
Robert Brijder, Hendrik Jan Hoogeboom
Maximal Pivots on Graphs with an Application to Gene Assembly CoRR (2009)
Robert Brijder, Hendrik Jan Hoogeboom
Perfectly quilted rectangular snake tilings. Theor. Comput. Sci. 410 (16) (2009)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
Reduction Graphs from Overlap Graphs for Gene Assembly in Ciliates. Int. J. Found. Comput. Sci. 20 (2) (2009)
Robert Brijder, Hendrik Jan Hoogeboom
Reality-and-Desire in Ciliates. Algorithmic Bioprocesses (2009)
Robert Brijder, Hendrik Jan Hoogeboom
The Group Structure of Pivot and Loop Complementation on Graphs and Set Systems CoRR (2009)
Robert Brijder, Hendrik Jan Hoogeboom
Nullity Invariance for Pivot and the Interlace Polynomial CoRR (2009)
Hendrik Jan Hoogeboom
Automata Walking over Trees and Graphs. NCMA (2009)
Robert Brijder, Hendrik Jan Hoogeboom
Extending the Overlap Graph for Gene Assembly in Ciliates. LATA (2008)
Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus
Strategies of loop recombination in ciliates. Discret. Appl. Math. 156 (10) (2008)
Robert Brijder, Hendrik Jan Hoogeboom
The fibers and range of reduction graphs in ciliates. Acta Informatica 45 (5) (2008)
Hendrik Jan Hoogeboom, Walter A. Kosters, Jeroen F. J. Laros
Selection of DNA Markers. IEEE Trans. Syst. Man Cybern. Part C 38 (1) (2008)
Joost Engelfriet, Hendrik Jan Hoogeboom
Automata with Nested Pebbles Capture First-Order Logic with Transitive Closure. Log. Methods Comput. Sci. 3 (2) (2007)
Robert Brijder, Hendrik Jan Hoogeboom
Extending the Overlap Graph for Gene Assembly in Ciliates CoRR (2007)
Yan Gao, Hendrik Jan Hoogeboom
P Systems with Single passenger Carriers. Int. J. Found. Comput. Sci. 18 (6) (2007)
Robert Brijder, Hendrik Jan Hoogeboom
Characterizing Reduction Graphs for Gene Assembly in Ciliates. Developments in Language Theory (2007)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
How Overlap Determines the Macronuclear Genes in Ciliates CoRR (2007)
André H. Deutz, Rudy van Vliet, Hendrik Jan Hoogeboom
High Spies (or How to Win a Programming Contest). FUN (2007)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates. FCT (2007)
Joost Engelfriet, Hendrik Jan Hoogeboom
Finitary Compositions of Two-way Finite-State Transductions. Fundam. Informaticae 80 (1-3) (2007)
Joost Engelfriet, Hendrik Jan Hoogeboom, Bart Samwel
XML transformation by tree-walking transducers with invisible pebbles. PODS (2007)
Robert Brijder, Hendrik Jan Hoogeboom
The Fibers and Range of Reduction Graphs in Ciliates CoRR (2007)
Joost Engelfriet, Hendrik Jan Hoogeboom
Automata with Nested Pebbles Capture First-Order Logic with Transitive Closure CoRR (2007)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
Reducibility of Gene Patterns in Ciliates using the Breakpoint Graph CoRR (2006)
Rudy van Vliet, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
The Construction of Minimal DNA Expressions. Nat. Comput. 5 (2) (2006)
Matteo Cavaliere, Pierluigi Frisco, Hendrik Jan Hoogeboom
Computing by Only Observing. Developments in Language Theory (2006)
Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus
Strategies of Loop Recombination in Ciliates CoRR (2006)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
Reducibility of gene patterns in ciliates using the breakpoint graph. Theor. Comput. Sci. 356 (1-2) (2006)
Robert Brijder, Hendrik Jan Hoogeboom, Michael Muskulus
Applicability of Loop Recombination in Ciliates Using the Breakpoint Graph. CompLife (2006)
Joost Engelfriet, Hendrik Jan Hoogeboom
Nested Pebbles and Transitive Closure. STACS (2006)
Robert Brijder, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
The Breakpoint Graph in Ciliates. CompLife (2005)
Vesa Halava, Tero Harju, Hendrik Jan Hoogeboom, Michel Latteux
Equality sets for recursively enumerable languages. RAIRO Theor. Informatics Appl. 39 (4) (2005)
Ron Breukelaar, Erik D. Demaine, Susan Hohenberger, Hendrik Jan Hoogeboom, Walter A. Kosters, David Liben-Nowell
Tetris is hard, even to approximate. Int. J. Comput. Geom. Appl. 14 (1-2) (2004)
Hendrik Jan Hoogeboom, Walter A. Kosters
Tetris and decidability. Inf. Process. Lett. 89 (6) (2004)
Hendrik Jan Hoogeboom, Walter A. Kosters
How to Construct Tetris Configurations. Int. J. Intell. Games Simul. 3 (2) (2004)
Vesa Halava, Tero Harju, Hendrik Jan Hoogeboom, Michel Latteux
Valence Languages Generated by Equality Sets. J. Autom. Lang. Comb. 9 (4) (2004)
Pierluigi Frisco, Hendrik Jan Hoogeboom
P systems with symport/antiport simulating counter automata. Acta Informatica 41 (2-3) (2004)
Rudy van Vliet, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
Combinatorial Aspects of Minimal DNA Expressions. DNA (2004)
Vesa Halava, Tero Harju, Hendrik Jan Hoogeboom, Michel Latteux
Languages Defined by Generalized Equality Sets. FCT (2003)
Hendrik Jan Hoogeboom, Nike van Vugt
Upper Bounds for Restricted Splicing. Formal and Natural Computing (2002)
Pierluigi Frisco, Hendrik Jan Hoogeboom
Simulating Counter Automata by P Systems with Symport/Antiport. WMC-CdeA (2002)
Hendrik Jan Hoogeboom
Carriers and Counters: P Systems with Carriers vs. (Blind) Counter Automata. Developments in Language Theory (2002)
Pierluigi Frisco, Hendrik Jan Hoogeboom, Paul Sant
A Direct Construction of a Universal P System. Fundam. Informaticae 49 (1-3) (2002)
Hendrik Jan Hoogeboom
Context-Free Valence Grammars - Revisited. Developments in Language Theory (2001)
Joost Engelfriet, Hendrik Jan Hoogeboom
MSO definable string transductions and two-way finite-state transducers. ACM Trans. Comput. Log. 2 (2) (2001)
Ray Dassen, Hendrik Jan Hoogeboom, Nike van Vugt
A characterization of non-iterated splicing with regular rules. Where Mathematics, Computer Science, Linguistics and Biology Meet (2001)
Andrzej Ehrenfeucht, Hendrik Jan Hoogeboom, Grzegorz Rozenberg, Nike van Vugt
Sequences of languages in forbidding-enforcing families. Soft Comput. 5 (2) (2001)
Hendrik Jan Hoogeboom, Nike van Vugt
Fair sticker languages. Acta Informatica 37 (3) (2000)
Joost Engelfriet, Hendrik Jan Hoogeboom, Jan-Pascal van Best
Trips on Trees. Acta Cybern. 14 (1) (1999)
Andrzej Ehrenfeucht, Hendrik Jan Hoogeboom, Grzegorz Rozenberg, Nike van Vugt
Forbidding and enforcing. DNA Based Computers (1999)
Joost Engelfriet, Hendrik Jan Hoogeboom
MSO definable string transductions and two-way finite state transducers CoRR (1999)
Joost Engelfriet, Hendrik Jan Hoogeboom
Two-Way Finite State Transducers and Monadic Second-Order Logic. ICALP (1999)
Joost Engelfriet, Hendrik Jan Hoogeboom
Tree-Walking Pebble Automata. Jewels are Forever (1999)
Hendrik Jan Hoogeboom, Paulien ten Pas
Monadic Second-Order Definable Text Languages. Theory Comput. Syst. 30 (4) (1997)
Hendrik Jan Hoogeboom, Anca Muscholl
The Code Problem for Traces - Improving the Boundaries. Theor. Comput. Sci. 172 (1-2) (1997)
Hendrik Jan Hoogeboom, Paulien ten Pas
Text Languages in an Algebraic Framework. Fundam. Informaticae 25 (3) (1996)
Tero Harju, Hendrik Jan Hoogeboom, H. C. M. Kleijn
Identities and Transductions. Results and Trends in Theoretical Computer Science (1994)
Andrzej Ehrenfeucht, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
Combinatorial Properties of Dependence Graphs Inf. Comput. 114 (2) (1994)
Hendrik Jan Hoogeboom, Paulien ten Pas
MSO Definable Text Languages. MFCS (1994)
Andrzej Ehrenfeucht, Hendrik Jan Hoogeboom, Paulien ten Pas, Grzegorz Rozenberg
An Introduction to Context-free Text Grammars. Developments in Language Theory (1993)
Joost Engelfriet, Hendrik Jan Hoogeboom
X-Automata on omega-Words. Theor. Comput. Sci. 110 (1) (1993)
Andrzej Ehrenfeucht, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
On the Structure of Recognizable Languages of Dependence Graphs. RAIRO Theor. Informatics Appl. 27 (1) (1993)
Hendrik Jan Hoogeboom, Grzegorz Rozenberg
Diamond properties of elementary net systems. Fundam. Informaticae 14 (3) (1991)
IJsbrand Jan Aalbersberg, Hendrik Jan Hoogeboom
Characterizations of the Decidability of Some Problems for Regular Trace Languages. Math. Syst. Theory 22 (1) (1989)
Joost Engelfriet, Hendrik Jan Hoogeboom
Automata with Storage on Infinite Words. ICALP (1989)
Andrzej Ehrenfeucht, Hendrik Jan Hoogeboom, Grzegorz Rozenberg
Recording the Use of Memory in Right-Boundary Grammars and Push-Down Automata. Acta Informatica 25 (2) (1988)
Joost Engelfriet, Hendrik Jan Hoogeboom
Prefix and Equality Languages of Rational Functions are Co-Context-Free. Inf. Process. Lett. 28 (2) (1988)

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Publication Activity (10 Years)

Top Topics

Top Venues

Hendrik Jan Hoogeboom