Rob J. De Boer

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 5

Top Topics

Density Distribution

Virus Detection

Computational Model

Straight Forward

Top Venues

PLoS Comput. Biol.

Publications

Edward C. Schrom II, Ann Kinzig, Stephanie Forrest, Andrea L. Graham, Simon A. Levin, Carl T. Bergstrom, Carlos Castillo-Chavez, James P. Collins, Rob J. De Boer, Adam Doupé, Roya Ensafi, Stuart I. Feldman, Bryan T. Grenfell, J. Alex Halderman, Silvie Huijben, Carlo C. Maley, Melanie Moses, Alan S. Perelson, Charles Perrings, Joshua B. Plotkin, Jennifer Rexford, Mohit Tiwari
Challenges in cybersecurity: Lessons from biological defense systems. CoRR (2021)
Mario Castro, Rob J. De Boer
The limitations, dangers, and benefits of simple methods for testing identifiability. PLoS Comput. Biol. 17 (10) (2021)
Mario Castro, Rob J. De Boer
Testing structural identifiability by a simple scaling method. PLoS Comput. Biol. 16 (11) (2020)
Hilje M. Doekes, Rob J. De Boer, Rutger Hermsen
Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations. PLoS Comput. Biol. 15 (8) (2019)
Bram Gerritsen, Aridaman Pandit, Arno C. Andeweg, Rob J. De Boer
RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data. Bioinform. 32 (20) (2016)
Raya Ahmed, Liset Westera, Julia Drylewicz, Marjet Elemans, Yan Zhang, Elizabeth Kelly, Rajko Reljic, Kiki Tesselaar, Rob J. De Boer, Derek C. Macallan, José A. M. Borghans, Becca Asquith
Reconciling Estimates of Cell Proliferation from Stable Isotope Labeling Experiments. PLoS Comput. Biol. 11 (10) (2015)
Ioana Niculescu, Johannes Textor, Rob J. De Boer
Crawling and Gliding: A Computational Model for Shape-Driven Cell Migration. PLoS Comput. Biol. 11 (10) (2015)
Christiaan H. van Dorp, Michiel van Boven, Rob J. De Boer
Immuno-epidemiological Modeling of HIV-1 Predicts High Heritability of the Set-Point Virus Load, while Selection for CTL Escape Dominates Virulence Evolution. PLoS Comput. Biol. 10 (12) (2014)
Johannes Textor, Sarah E. Henrickson, Judith N. Mandl, Ulrich H. von Andrian, Jürgen Westermann, Rob J. De Boer, Joost B. Beltman
Random Migration and Signal Integration Promote Rapid and Robust T Cell Recruitment. PLoS Comput. Biol. 10 (8) (2014)
Johannes Textor, Mathieu Sinn, Rob J. De Boer
Analytical results on the Beauchemin model of lymphocyte migration. BMC Bioinform. 14 (S-6) (2013)
Daniella Schittler, Frank Allgöwer, Rob J. De Boer
A new model to simulate and analyze proliferating cell populations in BrdU labeling experiments. BMC Syst. Biol. 7 (S-1) (2013)
Paola Carrillo-Bustamante, Can Kesmir, Rob J. De Boer
Virus Encoded MHC-Like Decoys Diversify the Inhibitory KIR Repertoire. PLoS Comput. Biol. 9 (10) (2013)
Rob J. De Boer
Which of Our Modeling Predictions Are Robust? PLoS Comput. Biol. 8 (7) (2012)
Jorg J. A. Calis, Rob J. De Boer, Can Kesmir
Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire. PLoS Comput. Biol. 8 (3) (2012)
Renske M. A. Vroomans, Athanasius F. M. Marée, Rob J. De Boer, Joost B. Beltman
Chemotactic Migration of T Cells towards Dendritic Cells Promotes the Detection of Rare Antigens. PLoS Comput. Biol. 8 (11) (2012)
Rob J. De Boer, Ruy M. Ribeiro, Alan S. Perelson
Current Estimates for HIV-1 Production Imply Rapid Viral Clearance in Lymphoid Tissues. PLoS Comput. Biol. 6 (9) (2010)
Vitaly V. Ganusov, José A. M. Borghans, Rob J. De Boer
Explicit Kinetic Heterogeneity: Mathematical Models for Interpretation of Deuterium Labeling of Heterogeneous Cell Populations. PLoS Comput. Biol. 6 (2) (2010)
Christian L. Althaus, Rob J. De Boer
Dynamics of Immune Escape during HIV/SIV Infection. PLoS Comput. Biol. 4 (7) (2008)
Vitaly V. Ganusov, Rob J. De Boer
Estimating Costs and Benefits of CTL Escape Mutations in SIV/HIV Infection. PLoS Comput. Biol. 2 (3) (2006)