Raul Rabadan

Publication Activity (10 Years)

Years Active: 2010-2022
Publications (10 Years): 10

Top Topics

Electronic Health Records

Low Grade Gliomas

Top Venues

BMC Syst. Biol.

Brain Informatics and Health

Publications

Wesley Tansey, Victor Veitch, Haoran Zhang, Raul Rabadan, David M. Blei
The Holdout Randomization Test for Feature Selection in Black Box Models. J. Comput. Graph. Stat. 31 (1) (2022)
Michael Bleher, Lukas Hahn, Juan Ángel Patino-Galindo, Mathieu Carrière, Ulrich Bauer, Raul Rabadan, Andreas Ott
Topology identifies emerging adaptive mutations in SARS-CoV-2. CoRR (2021)
Andrew J. Blumberg, Mathieu Carrière, Michael A. Mandell, Raul Rabadan, Soledad Villar
MREC: a fast and versatile framework for aligning and matching point clouds with applications to single cell molecular data. CoRR (2020)
Luis C. Aparicio, Mykola Bordyuh, Andrew J. Blumberg, Raul Rabadan
A Random Matrix Theory Approach to Denoise Single-Cell Data. Patterns 1 (3) (2020)
Rose Orenbuch, Ioan Filip, Devon Comito, Jeffrey Shaman, Itsik Pe'er, Raul Rabadan
arcasHLA: high-resolution HLA typing from RNAseq. Bioinform. 36 (1) (2020)
Floris P. Barthel, Kevin C. Johnson, Frederick S. Varn, Anzhela D. Moskalik, Georgette Tanner, Emre Kocakavuk, Kevin J. Anderson, Olajide Abiola, Kenneth D. Aldape, Kristin D. Alfaro, Donat Alpar, Samirkumar B. Amin, David M. Ashley, Pratiti Bandopadhayay, Jill S. Barnholtz-Sloan, Rameen Beroukhim, Christoph Bock, Priscilla K. Brastianos, Daniel J. Brat, Andrew R. Brodbelt, Alexander F. Bruns, Ketan R. Bulsara, Aruna Chakrabarty, Arnab Chakravarti, Jeffrey H. Chuang, Elizabeth B. Claus, Elizabeth J. Cochran, Jennifer Connelly, Joseph F. Costello, Gaetano Finocchiaro, Michael N. Fletcher, Pim J. French, Hui K. Gan, Mark R. Gilbert, Peter V. Gould, Matthew R. Grimmer, Antonio Iavarone, Azzam Ismail, Michael D. Jenkinson, Mustafa Khasraw, Hoon Kim, Mathilde C. M. Kouwenhoven, Peter S. LaViolette, Meihong Li, Peter Lichter, Keith L. Ligon, Allison K. Lowman, Tathiane M. Malta, Tali Mazor, Kerrie L. McDonald, Annette M. Molinaro, Do-Hyun Nam, Naema Nayyar, Ho Keung Ng, Chew Yee Ngan, Simone P. Niclou, Johanna M. Niers, Houtan Noushmehr, Javad Noorbakhsh, D. Ryan Ormond, Chul-Kee Park, Laila M. Poisson, Raul Rabadan, Bernhard Radlwimmer, Ganesh Rao, Guido Reifenberger, Jason K. Sa, Michael Schuster, Brian L. Shaw, Susan C. Short, Peter A. E. Sillevis Smitt, Andrew E. Sloan, Marion Smits, Hiromichi Suzuki, Ghazaleh Tabatabai, Erwin G. Van Meir, Colin Watts, Michael Weller, Pieter Wesseling, Bart A. Westerman, Georg Widhalm, Adelheid Woehrer, W. K. Alfred Yung, Gelareh Zadeh, Jason T. Huse, John F. De Groot, Lucy F. Stead, Roel G. W. Verhaak
Longitudinal molecular trajectories of diffuse glioma in adults. Nat. 576 (7785) (2019)
Wesley Tansey, Yixin Wang, David M. Blei, Raul Rabadan
Black Box FDR. CoRR (2018)
Wesley Tansey, Yixin Wang, David M. Blei, Raul Rabadan
Black Box FDR. ICML (2018)
Mathieu Carrière, Raul Rabadan
Topological Data Analysis of Single-cell Hi-C Contact Maps. CoRR (2018)
Guido D'Amico, Raul Rabadan, Matthew Kleban
A Theory of Taxonomy. CoRR (2016)
Kevin J. Emmett, Benjamin Schweinhart, Raul Rabadan
Multiscale Topology of Chromatin Folding. BICT (2015)
Kevin J. Emmett, Raul Rabadan
Quantifying Reticulation in Phylogenetic Complexes Using Homology. BICT (2015)
Francesco Abate, Sakellarios Zairis, Elisa Ficarra, Andrea Acquaviva, Chris H. Wiggins, Veronique Frattini, Anna Lasorella, Antonio Iavarone, Giorgio Inghirami, Raul Rabadan
Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer. BMC Syst. Biol. 8 (2014)
Andreas Holzinger, David Blanchard, Marcus D. Bloice, Katharina Holzinger, Vasile Palade, Raul Rabadan
Darwin, Lamarck, or Baldwin: Applying Evolutionary Algorithms to Machine Learning Techniques. WI-IAT (1) (2014)
Sakellarios Zairis, Hossein Khiabanian, Andrew J. Blumberg, Raul Rabadan
Moduli Spaces of Phylogenetic Trees Describing Tumor Evolutionary Patterns. Brain Informatics and Health (2014)
Kevin J. Emmett, Raul Rabadan
Characterizing Scales of Genetic Recombination and Antibiotic Resistance in Pathogenic Bacteria Using Topological Data Analysis. Brain Informatics and Health (2014)
Rachel D. Melamed, Hossein Khiabanian, Raul Rabadan
Data-driven discovery of seasonally linked diseases from an Electronic Health Records system. BMC Bioinform. 15 (S-6) (2014)
Vladimir Trifonov, Laura Pasqualucci, Riccardo Dalla Favera, Raul Rabadan
MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples. BMC Syst. Biol. 7 (2013)
Vladimir Trifonov, Laura Pasqualucci, Enrico Tiacci, Brunangelo Falini, Raul Rabadan
SAVI: a statistical algorithm for variant frequency identification. BMC Syst. Biol. 7 (S-2) (2013)
Santiago Vilar, Rave Harpaz, Eugenio Uriarte, Lourdes Santana, Raul Rabadan, Carol Friedman
Drug-drug interaction through molecular structure similarity analysis. J. Am. Medical Informatics Assoc. 19 (6) (2012)
Santiago Vilar, Rave Harpaz, Herbert S. Chase, Stefano Costanzi, Raul Rabadan, Carol Friedman
Facilitating adverse drug event detection in pharmacovigilance databases using molecular structure similarity: application to rhabdomyolysis. J. Am. Medical Informatics Assoc. 18 (Supplement) (2011)
Joseph Chan, Antony Holmes, Raul Rabadan
Network Analysis of Global Influenza Spread. PLoS Comput. Biol. 6 (11) (2010)