Daniel J. Brat

Publication Activity (10 Years)

Years Active: 2010-2019
Publications (10 Years): 10

Top Topics

Cell Segmentation

Fluorescence Microscopy Images

Top Venues

J. Am. Medical Informatics Assoc.

Publications

Floris P. Barthel, Kevin C. Johnson, Frederick S. Varn, Anzhela D. Moskalik, Georgette Tanner, Emre Kocakavuk, Kevin J. Anderson, Olajide Abiola, Kenneth D. Aldape, Kristin D. Alfaro, Donat Alpar, Samirkumar B. Amin, David M. Ashley, Pratiti Bandopadhayay, Jill S. Barnholtz-Sloan, Rameen Beroukhim, Christoph Bock, Priscilla K. Brastianos, Daniel J. Brat, Andrew R. Brodbelt, Alexander F. Bruns, Ketan R. Bulsara, Aruna Chakrabarty, Arnab Chakravarti, Jeffrey H. Chuang, Elizabeth B. Claus, Elizabeth J. Cochran, Jennifer Connelly, Joseph F. Costello, Gaetano Finocchiaro, Michael N. Fletcher, Pim J. French, Hui K. Gan, Mark R. Gilbert, Peter V. Gould, Matthew R. Grimmer, Antonio Iavarone, Azzam Ismail, Michael D. Jenkinson, Mustafa Khasraw, Hoon Kim, Mathilde C. M. Kouwenhoven, Peter S. LaViolette, Meihong Li, Peter Lichter, Keith L. Ligon, Allison K. Lowman, Tathiane M. Malta, Tali Mazor, Kerrie L. McDonald, Annette M. Molinaro, Do-Hyun Nam, Naema Nayyar, Ho Keung Ng, Chew Yee Ngan, Simone P. Niclou, Johanna M. Niers, Houtan Noushmehr, Javad Noorbakhsh, D. Ryan Ormond, Chul-Kee Park, Laila M. Poisson, Raul Rabadan, Bernhard Radlwimmer, Ganesh Rao, Guido Reifenberger, Jason K. Sa, Michael Schuster, Brian L. Shaw, Susan C. Short, Peter A. E. Sillevis Smitt, Andrew E. Sloan, Marion Smits, Hiromichi Suzuki, Ghazaleh Tabatabai, Erwin G. Van Meir, Colin Watts, Michael Weller, Pieter Wesseling, Bart A. Westerman, Georg Widhalm, Adelheid Woehrer, W. K. Alfred Yung, Gelareh Zadeh, Jason T. Huse, John F. De Groot, Lucy F. Stead, Roel G. W. Verhaak
Longitudinal molecular trajectories of diffuse glioma in adults. Nat. 576 (7785) (2019)
Xiaoyuan Guo, Hanyi Yu, Blair J. Rossetti, George Teodoro, Daniel J. Brat, Jun Kong
Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape based Intensity Analysis for Overlapped Nuclei in Fluorescence In-Situ Hybridization Images. CoRR (2018)
Mousumi Roy, Fusheng Wang, George Teodoro, Jose Velazqeuz Vega, Daniel J. Brat, Jun Kong
Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images. CoRR (2018)
Mousumi Roy, Fusheng Wang, George Teodoro, Jose Velazqeuz Vega, Daniel J. Brat, Jun Kong
Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images. EMBC (2018)
Xiaoyuan Guo, Hanyi Yu, Blair J. Rossetti, George Teodoro, Daniel J. Brat, Jun Kong
Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape-Based Intensity Analysis in Fluorescence Microscopy Images. EMBC (2018)
Blair J. Rossetti, Fusheng Wang, Pengyue Zhang, George Teodoro, Daniel J. Brat, Jun Kong
Dynamic registration for gigapixel serial whole slide images. ISBI (2017)
Pengyue Zhang, Fusheng Wang, George Teodoro, Yanhui Liang, Daniel J. Brat, Jun Kong
Automated level set segmentation of histopathologic cells with sparse shape prior support and dynamic occlusion constraint. ISBI (2017)
Jun Kong, Pengyue Zhang, Yanhui Liang, George Teodoro, Daniel J. Brat, Fusheng Wang
Robust cell segmentation for histological images of Glioblastoma. ISBI (2016)
Yue Hou, Lee A. D. Cooper, Scott Wilkinson, Adam I. Marcus, Daniel J. Brat
Spatiotemporal visualization of cell membrane dynamics and protein colocalization reveals correlation between membrane dynamics and metastatic invasion. BCB (2015)
Jun Kong, Fusheng Wang, George Teodoro, Yanhui Liang, Yangyang Zhu, Carol Tucker-Burden, Daniel J. Brat
Automated cell segmentation with 3D fluorescence microscopy images. ISBI (2015)
David A. Gutman, Jake Cobb, Dhananjaya Somanna, Yuna Park, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat, Lee A. D. Cooper
Research and applications: Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data. J. Am. Medical Informatics Assoc. 20 (6) (2013)
Jun Kong, Fusheng Wang, George Teodoro, Lee A. D. Cooper, Carlos S. Moreno, Tahsin M. Kurç, Tony Pan, Joel H. Saltz, Daniel J. Brat
High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates. BIBM (2013)
Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Jingjing Gao, Christina Appin, Sharath R. Cholleti, Tony Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin M. Kurç, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz
Integrated morphologic analysis for the identification and characterization of disease subtypes. J. Am. Medical Informatics Assoc. 19 (2) (2012)
Tahsin M. Kurç, Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, David A. Gutman, Daniel J. Brat, Fusheng Wang
High Performance Computing for Integrative Analysis of Large Pathology Image Datasets. AMIA (2012)
Lee A. D. Cooper, Alexis B. Carter, Alton B. Farris, Fusheng Wang, Jun Kong, David A. Gutman, Patrick M. Widener, Tony C. Pan, Sharath R. Cholleti, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
Digital Pathology: Data-Intensive Frontier in Medical Imaging. Proc. IEEE 100 (4) (2012)
Jun Kong, Lee A. D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Ashish Sharma, Tony Pan, Erwin G. Van Meir, Tahsin M. Kurç, Carlos S. Moreno, Joel H. Saltz, Daniel J. Brat
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes. IEEE Trans. Biomed. Eng. 58 (12) (2011)
Lee A. D. Cooper, Jun Kong, Fusheng Wang, Tahsin M. Kurç, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz
Morphological signatures and genomic correlates in glioblastoma. ISBI (2011)
Jun Kong, Lee A. D. Cooper, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma. EMBC (2011)
Jun Kong, Lee A. D. Cooper, Carlos S. Moreno, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat
In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response. EMBC (2011)
Jun Kong, Lee A. D. Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
A new steerable pressure force for parametric deformable models. Medical Imaging: Image Processing (2011)
Jun Kong, Lee A. D. Cooper, Fusheng Wang, Candace Chisolm, Carlos S. Moreno, Tahsin M. Kurç, Patrick M. Widener, Daniel J. Brat, Joel H. Saltz
A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas. ISBI (2011)
Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Sharath R. Cholleti, Tony C. Pan, Patrick M. Widener, Ashish Sharma, Tom Mikkelsen, Adam E. Flanders, Daniel L. Rubin, Erwin G. Van Meir, Tahsin M. Kurç, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz
An Integrative Approach for In Silico Glioma Research. IEEE Trans. Biomed. Eng. 57 (10) (2010)
Jun Kong, Lee A. D. Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism. ICASSP (2010)