Petri Törönen

Publication Activity (10 Years)

Years Active: 2002-2022
Publications (10 Years): 6

Top Topics

Microarray Expression Data

Mass Spectrometry

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Ilya Plyusnin, Liisa Holm, Petri Törönen
Correction: Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences. PLoS Comput. Biol. 18 (6) (2022)
Henri Tiittanen, Liisa Holm, Petri Törönen
A New Approach to Multilabel Stratified Cross Validation with Application to Large and Sparse Gene Ontology Datasets. CoRR (2021)
Ilya Plyusnin, Liisa Holm, Petri Törönen
Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences. PLoS Comput. Biol. 15 (11) (2019)
Alan Medlar, Petri Törönen, Liisa Holm
AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Petri Törönen, Alan Medlar, Liisa Holm
PANNZER2: a rapid functional annotation web server. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Pashupati P. Mishra, Alan Medlar, Liisa Holm, Petri Törönen
Robust multi-group gene set analysis with few replicates. BMC Bioinform. 17 (2016)
Patrik Koskinen, Petri Törönen, Jussi Nokso-Koivisto, Liisa Holm
PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment. Bioinform. 31 (10) (2015)
Pashupati P. Mishra, Petri Törönen, Yrjö Leino, Liisa Holm
Gene set analysis: limitations in popular existing methods and proposed improvements. Bioinform. 30 (19) (2014)
Ajay Kumar, Liisa Holm, Petri Törönen
GOParGenPy: a high throughput method to generate Gene Ontology data matrices. BMC Bioinform. 14 (2013)
Petri Pehkonen, Garry Wong, Petri Törönen
Heuristic Bayesian Segmentation for Discovery of Coexpressed Genes within Genomic Regions. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (1) (2010)
Martti Tolvanen, Pauli J. Ojala, Petri Törönen, Heidi Anderson, Jukka Partanen, Hannu Turpeinen
Interspliced transcription chimeras: Neglected pathological mechanism infiltrating gene accession queries? J. Biomed. Informatics 42 (2) (2009)
Petri Törönen, Petri Pehkonen, Liisa Holm
Generation of Gene Ontology benchmark datasets with various types of positive signal. BMC Bioinform. 10 (2009)
Petri Törönen, Pauli J. Ojala, Pekka Marttinen, Liisa Holm
Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function. BMC Bioinform. 10 (2009)
Matti Kankainen, Petri Pehkonen, Päivi Rosenström, Petri Törönen, Garry Wong, Liisa Holm
POXO: a web-enabled tool series to discover transcription factor binding sites. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Pekka Marttinen, Jukka Corander, Petri Törönen, Liisa Holm
Bayesian search of functionally divergent protein subgroups and their function specific residues. Bioinform. 22 (20) (2006)
Petri Pehkonen, Garry Wong, Petri Törönen
Theme discovery from gene lists for identification and viewing of multiple functional groups. BMC Bioinform. 6 (2005)
Petri Törönen
Selection of informative clusters from hierarchical cluster tree with gene classes. BMC Bioinform. 5 (2004)
Samuel Kaski, Janne Nikkilä, Merja Oja, Jarkko Venna, Petri Törönen, Eero Castrén
Trustworthiness and metrics in visualizing similarity of gene expression. BMC Bioinform. 4 (2003)
Janne Nikkilä, Petri Törönen, Samuel Kaski, Jarkko Venna, Eero Castrén, Garry Wong
Analysis and visualization of gene expression data using Self-Organizing Maps. Neural Networks 15 (8-9) (2002)