Petras J. Kundrotas

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 6

Top Topics

Biomedical Literature

Text Categorisation

Protein Complexes

Top Venues

PLoS Comput. Biol.

J. Comput. Chem.

Publications

Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser
Text mining for modeling of protein complexes enhanced by machine learning. Bioinform. 37 (4) (2021)
Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser
Natural language processing in text mining for structural modeling of protein complexes. BMC Bioinform. 19 (1) (2018)
Saveliy Belkin, Petras J. Kundrotas, Ilya A. Vakser
Inhibition of protein interactions: co-crystalized protein-protein interfaces are nearly as good as holo proteins in rigid-body ligand docking. J. Comput. Aided Mol. Des. 32 (7) (2018)
Taras Dauzhenka, Petras J. Kundrotas, Ilya A. Vakser
Computational Feasibility of an Exhaustive Search of Side-Chain Conformations in Protein-Protein Docking. J. Comput. Chem. 39 (24) (2018)
Ivan V. Anishchenko, Varsha D. Badal, Taras Dauzhenka, Madhurima Das, Alexander V. Tuzikov, Petras J. Kundrotas, Ilya A. Vakser
Genome-Wide Structural Modeling of Protein-Protein Interactions. ISBRA (2016)
Jinfang Zheng, Petras J. Kundrotas, Ilya A. Vakser, Shiyong Liu
Template-Based Modeling of Protein-RNA Interactions. PLoS Comput. Biol. 12 (9) (2016)
Tatsiana Kirys, Anatoly M. Ruvinsky, Deepak Singla, Alexander V. Tuzikov, Petras J. Kundrotas, Ilya A. Vakser
Simulated unbound structures for benchmarking of protein docking in the Dockground resource. BMC Bioinform. 16 (2015)
Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser
Text Mining for Protein Docking. PLoS Comput. Biol. 11 (12) (2015)
Petras J. Kundrotas, Ilya A. Vakser
Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling. PLoS Comput. Biol. 6 (4) (2010)
Petras J. Kundrotas, Zhengwei Zhu, Ilya A. Vakser
GWIDD: Genome-wide protein docking database. Nucleic Acids Res. 38 (Database-Issue) (2010)
Petras J. Kundrotas, Paulina Georgieva, Alexandra Shosheva, Petya Christova, Emil Alexov
Assessing the Quality of the Homology-Modeled 3D Structures from electrostatic Standpoint: Test on bacterial nucleoside monophosphate kinase Families. J. Bioinform. Comput. Biol. 5 (3) (2007)
Petras J. Kundrotas, Emil Alexov
PROTCOM: searchable database of protein complexes enhanced with domain-domain structures. Nucleic Acids Res. 35 (Database-Issue) (2007)
Petras J. Kundrotas, Emil Alexov
Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives. BMC Bioinform. 7 (2006)