Peter L. Freddolino

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 5

Top Topics

Immersive Environments

Expression Profiles

Top Venues

Nucleic Acids Res.

J. Chem. Inf. Model.

Genom. Proteom. Bioinform.

Publications

Mariano Spivak, John E. Stone, João Ribeiro, Jan Saam, Peter L. Freddolino, Rafael C. Bernardi, Emad Tajkhorshid
VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations. J. Chem. Inf. Model. 63 (15) (2023)
Wei Zheng, Qiqige Wuyun, Xiaogen Zhou, Yang Li, Peter L. Freddolino, Yang Zhang
LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation. Nucleic Acids Res. 50 (W1) (2022)
Yi-Heng Zhu, Chengxin Zhang, Yan Liu, Gilbert S. Omenn, Peter L. Freddolino, Dong-Jun Yu, Yang Zhang
TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction. Genom. Proteom. Bioinform. 20 (5) (2022)
Xiaoqiong Wei, Chengxin Zhang, Peter L. Freddolino, Yang Zhang, Zhiyong Lu
Detecting Gene Ontology misannotations using taxon-specific rate ratio comparisons. Bioinform. 36 (16) (2020)
Chengxin Zhang, Peter L. Freddolino, Yang Zhang
COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Eduard Schreiner, Leonardo G. Trabuco, Peter L. Freddolino, Klaus Schulten
Stereochemical errors and their implications to molecular dynamics simulations. BMC Bioinform. 12 (2011)
John E. Stone, James C. Phillips, Peter L. Freddolino, David J. Hardy, Leonardo G. Trabuco, Klaus Schulten
Accelerating molecular modeling applications with graphics processors. J. Comput. Chem. 28 (16) (2007)