Pavlo Lutsik

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 4

Top Topics

Systematic Evaluation

Matrix Factorization

Top Venues

Briefings Bioinform.

Publications

Yunhee Jeong, Jonathan Ronen, Wolfgang Kopp, Pavlo Lutsik, Altuna Akalin
scMaui: a widely applicable deep learning framework for single-cell multiomics integration in the presence of batch effects and missing data. BMC Bioinform. 25 (1) (2024)
Yunhee Jeong, Lisa Barros de Andrade e Sousa, Dominik Thalmeier, Reka Toth, Marlene Ganslmeier, Kersten Breuer, Christoph Plass, Pavlo Lutsik
Systematic evaluation of cell-type deconvolution pipelines for sequencing-based bulk DNA methylomes. Briefings Bioinform. 23 (4) (2022)
Anand Mayakonda, Maximilian Schönung, Joschka Hey, Rajbir Nath Batra, Clarissa Feuerstein-Akgoz, Kristin Köhler, Daniel B. Lipka, Rocio Sotillo, Christoph Plass, Pavlo Lutsik, Reka Toth
Methrix: an R/Bioconductor package for systematic aggregation and analysis of bisulfite sequencing data. Bioinform. 36 (22-23) (2021)
Clémentine Decamps, Florian Privé, Raphael Bacher, Daniel Jost, Arthur Waguet, Eugene Andres Houseman, Eugene Lurie, Pavlo Lutsik, Aleksandar Milosavljevic, Michael Scherer, Michael G. B. Blum, Magali Richard
Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software. BMC Bioinform. 21 (1) (2020)
Matthias Döring, Gilles Gasparoni, Jasmin Gries, Karl Nordström, Pavlo Lutsik, Jörn Walter, Nico Pfeifer
Identification and analysis of methylation call differences between bisulfite microarray and bisulfite sequencing data with statistical learning techniques. BMC Bioinform. 16 (S-3) (2015)
Junfang Chen, Pavlo Lutsik, Ruslan Akulenko, Jörn Walter, Volkhard Helms
AKSmooth: Enhancing low-coverage bisulfite sequencing data via kernel-based smoothing. J. Bioinform. Comput. Biol. 12 (6) (2014)
Martin Slawski, Matthias Hein, Pavlo Lutsik
Matrix factorization with Binary Components. CoRR (2014)
Daniel Becker, Pavlo Lutsik, Peter Ebert, Christoph Bock, Thomas Lengauer, Jörn Walter
BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Martin Slawski, Matthias Hein, Pavlo Lutsik
Matrix factorization with binary components. NIPS (2013)
Pavlo Lutsik, Lars Feuerbach, Julia Arand, Thomas Lengauer, Jörn Walter, Christoph Bock
BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)