Nikolai Nøjgaard

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 18

Top Topics

Tree Construction

Graph Transformation

Top Venues

J. Comput. Biol.

Publications

Jakob L. Andersen, Akbar Davoodi, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
Automated Inference of Graph Transformation Rules. CoRR (2024)
Jakob L. Andersen, Rolf Fagerberg, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
Efficient Modular Graph Transformation Rule Application. CoRR (2022)
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
Characterizing Catalytic Mechanisms with Overlay Graphs. CoRR (2022)
Christoph Flamm, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Peter F. Stadler
Generic Context-Aware Group Contributions. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
Representing Catalytic Mechanisms with Rule Composition. J. Chem. Inf. Model. 62 (22) (2022)
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
Graph Transformation for Enzymatic Mechanisms. CoRR (2021)
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm, Walter Fontana, Juraj Kolcák, Christophe V. F. P. Laurent, Daniel Merkle, Nikolai Nøjgaard
Graph transformation for enzymatic mechanisms. Bioinform. 37 (Supplement) (2021)
Nikolai Nøjgaard, Walter Fontana, Marc Hellmuth, Daniel Merkle
Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry. CoRR (2021)
Nikolai Nøjgaard, Walter Fontana, Marc Hellmuth, Daniel Merkle
Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry. J. Comput. Biol. 28 (7) (2021)
Jakob Lykke Andersen, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Marco Peressotti
A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework. SOFSEM (Doctoral Student Research Forum) (2020)
Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard
Atom Tracking Using Cayley Graphs. ISBRA (2020)
Jakob Lykke Andersen, Marc Hellmuth, Daniel Merkle, Nikolai Nøjgaard, Marco Peressotti
A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework. CoRR (2019)
Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth
Partial Homology Relations - Satisfiability in Terms of Di-Cographs. COCOON (2018)
Marc Hellmuth, Anders S. Knudsen, Michal Kotrbcík, Daniel Merkle, Nikolai Nøjgaard
Linear Time Canonicalization and Enumeration of Non-Isomorphic 1-Face Embeddings. ALENEX (2018)
Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
Time-consistent reconciliation maps and forbidden time travel. Algorithms Mol. Biol. 13 (1) (2018)
Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. WABI (2017)
Nikolai Nøjgaard, Manuela Geiß, Peter F. Stadler, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps. CoRR (2017)
Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth
Partial Orthology, Paralogy and Xenology Relations - Satisfiability in terms of Di-Cographs. CoRR (2017)