Mohammad R. K. Mofrad

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 18

Top Topics

Protein Functional

Top Venues

npj Digit. Medicine

BMC Medical Informatics Decis. Mak.

Publications

Ali Gharizadeh, Karim Abbasi, Amin Ghareyazi, Mohammad R. K. Mofrad, Hamid R. Rabiee
HGTDR: Advancing Drug Repurposing with Heterogeneous Graph Transformers. CoRR (2024)
Salmonn Talebi, Elizabeth Tong, Anna Li, Ghiam Yamin, Greg Zaharchuk, Mohammad R. K. Mofrad
Exploring the performance and explainability of fine-tuned BERT models for neuroradiology protocol assignment. BMC Medical Informatics Decis. Mak. 24 (1) (2024)
Andrew Dickson, Mohammad R. K. Mofrad
Fine-tuning protein embeddings for functional similarity evaluation. Bioinform. 40 (8) (2024)
Mohammad Khavani, Aliyeh Mehranfar, Mohammad R. K. Mofrad
On the Sensitivity and Affinity of Gold, Silver, and Platinum Surfaces against the SARS-CoV-2 Virus: A Comparative Computational Study. J. Chem. Inf. Model. 63 (4) (2023)
Andrew Dickson, Ehsaneddin Asgari, Alice C. McHardy, Mohammad R. K. Mofrad
GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations. Bioinform. 39 (2) (2023)
Salmonn Talebi, Elizabeth Tong, Mohammad R. K. Mofrad
Beyond the Hype: Assessing the Performance, Trustworthiness, and Clinical Suitability of GPT3.5. CoRR (2023)
Esmaeil Nourani, Ehsaneddin Asgari, Alice C. McHardy, Mohammad R. K. Mofrad
TripletProt: Deep Representation Learning of Proteins Based On Siamese Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Akash Bahai, Ehsaneddin Asgari, Mohammad R. K. Mofrad, Andreas Kloetgen, Alice C. McHardy
EpitopeVec: linear epitope prediction using deep protein sequence embeddings. Bioinform. 37 (23) (2021)
Ehsaneddin Asgari, Fabienne Braune, Benjamin Roth, Christoph Ringlstetter, Mohammad R. K. Mofrad
UniSent: Universal Adaptable Sentiment Lexica for 1000+ Languages. LREC (2020)
Ali Lesani, Somaieh Kazemnejad, Mahdi Moghimi Zand, Mojtaba Azadi, Hassan Jafari, Mohammad R. K. Mofrad, Reza Nosrati
Quantification of human sperm concentration using machine learning-based spectrophotometry. Comput. Biol. Medicine 127 (2020)
Ehsaneddin Asgari, Fabienne Braune, Christoph Ringlstetter, Mohammad R. K. Mofrad
UniSent: Universal Adaptable Sentiment Lexica for 1000+ Languages. CoRR (2019)
Ehsaneddin Asgari, Kiavash Garakani, Alice C. McHardy, Mohammad R. K. Mofrad
MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples. Bioinform. 35 (6) (2019)
Ehsaneddin Asgari, Philipp C. Münch, Till R. Lesker, Alice C. McHardy, Mohammad R. K. Mofrad
DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection. Bioinform. 35 (14) (2019)
Ehsaneddin Asgari, Kiavash Garakani, Alice C. McHardy, Mohammad R. K. Mofrad
MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples. Bioinform. 34 (13) (2018)
Ali Madani, Jia Rui Ong, Anshul Tibrewal, Mohammad R. K. Mofrad
Deep echocardiography: data-efficient supervised and semi-supervised deep learning towards automated diagnosis of cardiac disease. npj Digit. Medicine 1 (2018)
Ali Madani, Ramy Arnaout, Mohammad R. K. Mofrad, Rima Arnaout
Fast and accurate view classification of echocardiograms using deep learning. npj Digit. Medicine 1 (2018)
Ehsaneddin Asgari, Mohammad R. K. Mofrad
Comparing Fifty Natural Languages and Twelve Genetic Languages Using Word Embedding Language Divergence (WELD) as a Quantitative Measure of Language Distance. CoRR (2016)
Ehsaneddin Asgari, Soroush Nasiriany, Mohammad R. K. Mofrad
Text Analysis and Automatic Triage of Posts in a Mental Health Forum. CLPsych@HLT-NAACL (2016)
Ehsaneddin Asgari, Mohammad R. K. Mofrad
ProtVec: A Continuous Distributed Representation of Biological Sequences. CoRR (2015)
Ehsaneddin Asgari, Kiavash Garakani, Mohammad R. K. Mofrad
A New Approach for Scalable Analysis of Microbial Communities. CoRR (2015)
Mehrdad Mehrbod, Mohammad R. K. Mofrad
Localized Lipid Packing of Transmembrane Domains Impedes Integrin Clustering. PLoS Comput. Biol. 9 (3) (2013)
Javad Golji, Mohammad R. K. Mofrad
The Interaction of Vinculin with Actin. PLoS Comput. Biol. 9 (4) (2013)
Javad Golji, Robert Collins, Mohammad R. K. Mofrad
Molecular Mechanics of the α-Actinin Rod Domain: Bending, Torsional, and Extensional Behavior. PLoS Comput. Biol. 5 (5) (2009)