Ali Madani

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 19

Top Topics

Image Annotation

Language Modelling

Top Venues

npj Digit. Medicine

Comput. Electron. Agric.

Publications

Alex Morehead, Jeffrey Ruffolo, Aadyot Bhatnagar, Ali Madani
Towards Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion. CoRR (2024)
Erik Nijkamp, Jeffrey Ruffolo, Eli N. Weinstein, Nikhil Naik, Ali Madani
ProGen2: Exploring the Boundaries of Protein Language Models. CoRR (2022)
Alvin Chan, Ali Madani, Ben Krause, Nikhil Naik
Deep Extrapolation for Attribute-Enhanced Generation. NeurIPS (2021)
Christian Dallago, Jody Mou, Kadina E. Johnston, Bruce J. Wittmann, Nicholas Bhattacharya, Samuel Goldman, Ali Madani, Kevin Yang
FLIP: Benchmark tasks in fitness landscape inference for proteins. NeurIPS Datasets and Benchmarks (2021)
Alvin Chan, Ali Madani, Ben Krause, Nikhil Naik
Deep Extrapolation for Attribute-Enhanced Generation. CoRR (2021)
Andre Esteva, Katherine Chou, Serena Yeung, Nikhil Naik, Ali Madani, Ali Mottaghi, Yun Liu, Eric Topol, Jeff Dean, Richard Socher
Deep learning-enabled medical computer vision. npj Digit. Medicine 4 (2021)
Jesse Vig, Ali Madani, Lav R. Varshney, Caiming Xiong, Richard Socher, Nazneen Fatema Rajani
BERTology Meets Biology: Interpreting Attention in Protein Language Models. ICLR (2021)
Jesse Vig, Ali Madani, Lav R. Varshney, Caiming Xiong, Richard Socher, Nazneen Fatema Rajani
BERTology Meets Biology: Interpreting Attention in Protein Language Models. CoRR (2020)
Ali Madani, Bryan McCann, Nikhil Naik, Nitish Shirish Keskar, Namrata Anand, Raphael R. Eguchi, Po-Ssu Huang, Richard Socher
ProGen: Language Modeling for Protein Generation. CoRR (2020)
Pascal Sturmfels, Jesse Vig, Ali Madani, Nazneen Fatema Rajani
Profile Prediction: An Alignment-Based Pre-Training Task for Protein Sequence Models. CoRR (2020)
Ali Madani, Cyna Shirazinejad, Jia Rui Ong, Hengameh Shams, Mohammad Mofrad
ProDyn0: Inferring calponin homology domain stretching behavior using graph neural networks. CoRR (2019)
Mehdi Moradi, Ali Madani, Yaniv Gur, Yufan Guo, Tanveer F. Syeda-Mahmood
Bimodal network architectures for automatic generation of image annotation from text. CoRR (2018)
Ali Madani, Mehdi Moradi, Alexandros Karargyris, Tanveer F. Syeda-Mahmood
Semi-supervised learning with generative adversarial networks for chest X-ray classification with ability of data domain adaptation. ISBI (2018)
Ali Madani, Jia Rui Ong, Anshul Tibrewal, Mohammad R. K. Mofrad
Deep echocardiography: data-efficient supervised and semi-supervised deep learning towards automated diagnosis of cardiac disease. npj Digit. Medicine 1 (2018)
Ali Madani, Mehdi Moradi, Alexandros Karargyris, Tanveer F. Syeda-Mahmood
Chest x-ray generation and data augmentation for cardiovascular abnormality classification. Medical Imaging: Image Processing (2018)
Mehdi Moradi, Ali Madani, Yaniv Gur, Yufan Guo, Tanveer F. Syeda-Mahmood
Bimodal Network Architectures for Automatic Generation of Image Annotation from Text. MICCAI (1) (2018)
Ali Madani, Ramy Arnaout, Mohammad R. K. Mofrad, Rima Arnaout
Fast and accurate view classification of echocardiograms using deep learning. npj Digit. Medicine 1 (2018)
Ali Madani, Ramy Arnaout, Mohammad Mofrad, Rima Arnaout
Fast and accurate classification of echocardiograms using deep learning. CoRR (2017)
Golmar Golmohammadi, Ramesh P. Rudra, Shiv O. Prasher, Ali Madani, Pradeep K. Goel, Kourosh Mohammadi
Modeling the impacts of tillage practices on water table depth, drain outflow and nitrogen losses using DRAINMOD. Comput. Electron. Agric. 124 (2016)