Michael R. Brent

Publication Activity (10 Years)

Years Active: 1990-2023
Publications (10 Years): 4

Top Topics

Clustering Analysis

Gene Expression

Engineering Problems

Top Venues

Publications

Dhoha Abid, Michael R. Brent
NetProphet 3: a machine learning framework for transcription factor network mapping and multi-omics integration. Bioinform. 39 (2) (2023)
Cynthia Z. Ma, Michael R. Brent
Inferring TF activities and activity regulators from gene expression data with constraints from TF perturbation data. Bioinform. 37 (9) (2021)
Yiming Kang, Hien-Haw Liow, Ezekiel J. Maier, Michael R. Brent
NetProphet 2.0: mapping transcription factor networks by exploiting scalable data resources. Bioinform. 34 (2) (2018)
Michael R. Brent
Model-based Transcriptome Engineering. BCB (2017)
Sooraj KuttyKrishnan, Jeffrey Sabina, Laura Langton, Mark Johnston, Michael R. Brent
A Quantitative Model of Glucose Signaling in Yeast Reveals an Incoherent Feed Forward Loop Leading to a Specific, Transient Pulse of Transcription. RECOMB (2011)
David V. Lu, Randall H. Brown, Manimozhiyan Arumugam, Michael R. Brent
Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner. Bioinform. 25 (13) (2009)
Minmin Chen, Yixin Chen, Michael R. Brent, Aaron E. Tenney
Gradient-Based Feature Selection for Conditional Random Fields and its Applications in Computational Genetics. ICTAI (2009)
Brian C. Haynes, Michael R. Brent
Benchmarking regulatory network reconstruction with GRENDEL. Bioinform. 25 (6) (2009)
Minmin Chen, Yixin Chen, Michael R. Brent, Aaron E. Tenney
Constrained optimization for validation-guided conditional random field learning. KDD (2009)
Minmin Chen, Yixin Chen, Michael R. Brent
CRF-OPT: An Efficient High-Quality Conditional Random Field Solver. AAAI (2008)
Evan Keibler, Manimozhiyan Arumugam, Michael R. Brent
The Treeterbi and Parallel Treeterbi algorithms: efficient, optimal decoding for ordinary, generalized and pair HMMs. Bioinform. 23 (5) (2007)
Samuel S. Gross, Michael R. Brent
Using Multiple Alignments to Improve Gene Prediction. J. Comput. Biol. 13 (2) (2006)
Chaochun Wei, Michael R. Brent
gene prediction. BMC Bioinform. 7 (2006)
Samuel S. Gross, Michael R. Brent
Using Multiple Alignments to Improve Gene Prediction. RECOMB (2005)
Eduardo Eyras, Alexandre Reymond, Robert Castelo, Jacqueline M. Bye, Francisco Camara, Paul Flicek, Elizabeth J. Huckle, Genis Parra, David D. Shteynberg, Carine Wyss, Jane Rogers, Stylianos E. Antonarakis, Ewan Birney, Roderic Guigó, Michael R. Brent
Gene finding in the chicken genome. BMC Bioinform. 6 (2005)
Evan Keibler, Michael R. Brent
Eval: A software package for analysis of genome annotations. BMC Bioinform. 4 (2003)
Matthew G. Snover, Gaja Jarosz, Michael R. Brent
Unsupervised Learning of Morphology Using a Novel Directed Search Algorithm: Taking the First Step. SIGMORPHON (2002)
Matthew G. Snover, Michael R. Brent
A Probabilistic Model for Learning Concatenative Morphology. NIPS (2002)
Ian Korf, Paul Flicek, Daniel Duan, Michael R. Brent
Integrating genomic homology into gene structure prediction. ISMB (Supplement of Bioinformatics) (2001)
Michael R. Brent, Xiaopeng Tao
Chinese Text Segmentation With MBDP-1: Making the Most of Training Corpora. ACL (2001)
Matthew G. Snover, Michael R. Brent
A Bayesian Model for Morpheme and Paradigm Identification. ACL (2001)
Michael R. Brent
An Efficient, Probabilistically Sound Algorithm for Segmentation and Word Discovery CoRR (1999)
Michael R. Brent
An Efficient, Probabilistically Sound Algorithm for Segmentation and Word Discovery. Mach. Learn. 34 (1-3) (1999)
Michael R. Brent, Timothy A. Cartwright
Lexical categorization: fitting template grammars by incremental MDL optimization. ICGI (1996)
Timothy A. Cartwright, Michael R. Brent
Segmenting speech without a lexicon: The roles of phonotactics and speech source. CoRR (1994)
Timothy A. Cartwright, Michael R. Brent
Segmenting Speech Without a Lexicon: The Roles of Phonotactics and Speech Source. SIGMORPHON (1994)
Michael R. Brent
From Grammar to Lexicon: Unsupervised Learning of Lexical Syntax. Comput. Linguistics 19 (2) (1993)
Michael R. Brent
Automatic Semantic Classification Of Verbs From Their Syntactic Contexts: An Implemented Classifier For Stativity. EACL (1991)
Michael R. Brent, Robert C. Berwick
Automatic Acquisition of Subcategorization Frames from Tagged Text. HLT (1991)
Michael R. Brent
Automatic Acquisition of Subcategorization Frames from Untagged Text. ACL (1991)
Michael R. Brent
A Simplified Theory of Tense Representations and Constraints on their Composition. ACL (1990)