Ludmil B. Alexandrov

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 6

Top Topics

Sparse Non Negative

Top Venues

Publications

Marcos Díaz-Gay, Raviteja Vangara, Mark Barnes, Xi Wang, S. M. Ashiqul Islam, Ian Vermes, Stephen Duke, Nithish Bharadhwaj Narasimman, Ting Yang, Zichen Jiang, Sarah J. Moody, Sergey Senkin, Paul Brennan, Michael R. Stratton, Ludmil B. Alexandrov
Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment. Bioinform. 39 (12) (2023)
Erik N. Bergstrom, Mousumy Kundu, Noura Tbeileh, Ludmil B. Alexandrov
Examining clustered somatic mutations with SigProfilerClusters. Bioinform. 38 (13) (2022)
Erik N. Bergstrom, Mark Barnes, Iñigo Martincorena, Ludmil B. Alexandrov
Generating realistic null hypothesis of cancer mutational landscapes using SigProfilerSimulator. BMC Bioinform. 21 (1) (2020)
Xiaotu Ma, Yu Liu, Yanling Liu, Ludmil B. Alexandrov, Michael N. Edmonson, Charles Gawad, Xin Zhou, Yongjin Li, Michael Rusch, John Easton, Robert Huether, Veronica Gonzalez-Pena, Mark R. Wilkinson, Leandro Hermida, Sean Davis, Edgar Sioson, Stanley Pounds, Xueyuan Cao, Rhonda E. Ries, Zhaoming Wang, Xiang Chen, Li Dong, Sharon J. Diskin, Malcolm A. Smith, Jaime M. Guidry Auvil, Paul S. Meltzer, Ching C. Lau, Elizabeth J. Perlman, John M. Maris, Soheil Meshinchi, Stephen P. Hunger, Daniela S. Gerhard, Jinghui Zhang
Pan-cancer genome and transcriptome analyses of 1, 699 paediatric leukaemias and solid tumours. Nat. 555 (7696) (2018)
Daniel O'Malley, Velimir V. Vesselinov, Boian S. Alexandrov, Ludmil B. Alexandrov
Nonnegative/binary matrix factorization with a D-Wave quantum annealer. CoRR (2017)
Ludmil B. Alexandrov, Alan R. Bishop, Kim Ø. Rasmussen, Boian S. Alexandrov
The role of structural parameters in DNA cyclization. BMC Bioinform. 17 (2016)
Andrea Gobbi, Francesco Iorio, Kevin J. Dawson, David C. Wedge, David Tamborero, Ludmil B. Alexandrov, Núria López-Bigas, Mathew Garnett, Giuseppe Jurman, Julio Saez-Rodriguez
Fast randomization of large genomic datasets while preserving alteration counts. Bioinform. 30 (17) (2014)
Kristy Nowak-Lovato, Ludmil B. Alexandrov, Afsheen Banisadr, Amy L. Bauer, Alan R. Bishop, Anny Usheva, Fangping Mu, Elizabeth Hong-Geller, Kim Ø. Rasmussen, William S. Hlavacek, Boian S. Alexandrov
Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics. PLoS Comput. Biol. 9 (1) (2013)
K. B. Blagoev, Bogdan Mihaila, B. J. Travis, Ludmil B. Alexandrov, Alan R. Bishop, Douglas M. Ranken, Stefan Posse, Charles Gasparovic, Andy R. Mayer, Cheryl J. Aine, István Ulbert, M. Morita, W. Müller, J. Connor, Eric Halgren
Modelling the magnetic signature of neuronal tissue. NeuroImage 37 (1) (2007)