Alan R. Bishop

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 8

Top Topics

Parallel Processing

Single Processor

Top Venues

Publications

Anowarul Kabir, Manish Bhattarai, Kim Ø. Rasmussen, Amarda Shehu, Anny Usheva, Alan R. Bishop, Boian S. Alexandrov
Examining DNA breathing with pyDNA-EPBD. Bioinform. 39 (10) (2023)
Christie L. Alappat, Johannes Hofmann, Georg Hager, Holger Fehske, Alan R. Bishop, Gerhard Wellein
Understanding HPC Benchmark Performance on Intel Broadwell and Cascade Lake Processors. ISC (2020)
Christie L. Alappat, Achim Basermann, Alan R. Bishop, Holger Fehske, Georg Hager, Olaf Schenk, Jonas Thies, Gerhard Wellein
A Recursive Algebraic Coloring Technique for Hardware-efficient Symmetric Sparse Matrix-vector Multiplication. ACM Trans. Parallel Comput. 7 (3) (2020)
Christie L. Alappat, Johannes Hofmann, Georg Hager, Holger Fehske, Alan R. Bishop, Gerhard Wellein
Understanding HPC Benchmark Performance on Intel Broadwell and Cascade Lake Processors. CoRR (2020)
Christie L. Alappat, Georg Hager, Olaf Schenk, Jonas Thies, Achim Basermann, Alan R. Bishop, Holger Fehske, Gerhard Wellein
A Recursive Algebraic Coloring Technique for Hardware-Efficient Symmetric Sparse Matrix-Vector Multiplication. CoRR (2019)
Moritz Kreutzer, Dominik Ernst, Alan R. Bishop, Holger Fehske, Georg Hager, Kengo Nakajima, Gerhard Wellein
Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs. ISC (2018)
Moritz Kreutzer, Georg Hager, Dominik Ernst, Holger Fehske, Alan R. Bishop, Gerhard Wellein
Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs. CoRR (2018)
Ludmil B. Alexandrov, Alan R. Bishop, Kim Ø. Rasmussen, Boian S. Alexandrov
The role of structural parameters in DNA cyclization. BMC Bioinform. 17 (2016)
Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Alan R. Bishop
A Unified Sparse Matrix Data Format for Efficient General Sparse Matrix-Vector Multiplication on Modern Processors with Wide SIMD Units. SIAM J. Sci. Comput. 36 (5) (2014)
Alexander I. Nesterov, Gennady P. Berman, Juan C. Beas Zepeda, Alan R. Bishop
Non-Hermitian quantum annealing in the antiferromagnetic Ising chain. Quantum Inf. Process. 13 (2) (2014)
Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Alan R. Bishop
A unified sparse matrix data format for modern processors with wide SIMD units. CoRR (2013)
Kristy Nowak-Lovato, Ludmil B. Alexandrov, Afsheen Banisadr, Amy L. Bauer, Alan R. Bishop, Anny Usheva, Fangping Mu, Elizabeth Hong-Geller, Kim Ø. Rasmussen, William S. Hlavacek, Boian S. Alexandrov
Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics. PLoS Comput. Biol. 9 (1) (2013)
Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Achim Basermann, Alan R. Bishop
Sparse Matrix-vector Multiplication on GPGPU Clusters: A New Storage Format and a Scalable Implementation. IPDPS Workshops (2012)
Moritz Kreutzer, Georg Hager, Gerhard Wellein, Holger Fehske, Achim Basermann, Alan R. Bishop
Sparse matrix-vector multiplication on GPGPU clusters: A new storage format and a scalable implementation CoRR (2011)
Boian S. Alexandrov, Vladimir Gelev, Sang Wook Yoo, Alan R. Bishop, Kim Ø. Rasmussen, Anny Usheva
Toward a Detailed Description of the Thermally Induced Dynamics of the Core Promoter. PLoS Comput. Biol. 5 (3) (2009)
Ricardo Carretero-González, Panayotis G. Kevrekidis, Dimitri J. Frantzeskakis, Boris A. Malomed, S. Nandi, Alan R. Bishop
Soliton trains and vortex streets as a form of Cerenkov radiation in trapped Bose-Einstein condensates. Math. Comput. Simul. 74 (4-5) (2007)
Panayotis G. Kevrekidis, Avinash Khare, Avadh Saxena, I. Bena, Alan R. Bishop
Asymptotic calculation of discrete non-linear wave interactions. Math. Comput. Simul. 74 (4-5) (2007)
K. B. Blagoev, Bogdan Mihaila, B. J. Travis, Ludmil B. Alexandrov, Alan R. Bishop, Douglas M. Ranken, Stefan Posse, Charles Gasparovic, Andy R. Mayer, Cheryl J. Aine, István Ulbert, M. Morita, W. Müller, J. Connor, Eric Halgren
Modelling the magnetic signature of neuronal tissue. NeuroImage 37 (1) (2007)
Panayotis G. Kevrekidis, Boris A. Malomed, Dimitri J. Frantzeskakis, Alan R. Bishop, Hector E. Nistazakis, Ricardo Carretero-González
Domain walls of single-component Bose-Einstein condensates in external potentials. Math. Comput. Simul. 69 (3-4) (2005)
Angel Sánchez, Alan R. Bishop
Collective Coordinates and Length-Scale Competition in Spatially Inhomogeneous Soliton-Bearing Equations. SIAM Rev. 40 (3) (1998)