Lisa Tucker-Kellogg

ORCID

Publication Activity (10 Years)

Years Active: 2007-2022
Publications (10 Years): 9

Top Venues

Massachusetts Institute of Technology, Cambridge, MA, USA (PHD)

Education History

Massachusetts Institute of Technology, Cambridge, MA, USA

PHD

Publications

Huey-Eng Chua, Lisa Tucker-Kellogg, Sourav S. Bhowmick
ArcheGEO: towards improving relevance of gene expression omnibus search results. BCB (2022)
N. Suhas Jagannathan, Christopher W. V. Hogue, Lisa Tucker-Kellogg
Computational modeling suggests binding-induced expansion of Epsin disordered regions upon association with AP2. PLoS Comput. Biol. 17 (1) (2021)
N. Suhas Jagannathan, Mario O. Ihsan, Xiao Xuan Kin, Roy E. Welsch, Marie-Véronique Clément, Lisa Tucker-Kellogg
Transcompp: understanding phenotypic plasticity by estimating Markov transition rates for cell state transitions. Bioinform. 36 (9) (2020)
N. Suhas Jagannathan, Christopher W. V. Hogue, Lisa Tucker-Kellogg
De novo Ensemble Modeling Suggests that AP2-Binding to Disordered Regions Can Increase StericVolume of Epsin but Not Eps15. PSB (2020)
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg
TINTIN: Exploiting Target Features for Signaling Network Similarity Computation and Ranking. BCB (2017)
Huipeng Li, Lakshmi Venkatraman, Balakrishnan Chakrapani Narmada, Jacob K. White, Hanry Yu, Lisa Tucker-Kellogg
Computational analysis reveals the coupling between bistability and the sign of a feedback loop in a TGF-β1 activation model. BMC Syst. Biol. 11 (S-7) (2017)
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, C. Forbes Dewey Jr.
TENET: A Machine Learning-Based System for Target Characterization in Signaling Networks. ICDM Workshops (2016)
Huey-Eng Chua, Sourav S. Bhowmick, Jie Zheng, Lisa Tucker-Kellogg
TAPESTRY: Network-centric Target Prioritization in Disease-related Signaling Networks. BCB (2016)
Binh P. Nguyen, Hans Heemskerk, Peter T. C. So, Lisa Tucker-Kellogg
Superpixel-based segmentation of muscle fibers in multi-channel microscopy. BMC Syst. Biol. 10 (S-5) (2016)
Tri Hieu Nim, Le Luo, Jacob K. White, Marie-Véronique Clément, Lisa Tucker-Kellogg
Non-canonical Activation of Akt in Serum-Stimulated Fibroblasts, Revealed by Comparative Modeling of Pathway Dynamics. PLoS Comput. Biol. 11 (11) (2015)
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, C. Forbes Dewey Jr.
TENET: topological feature-based target characterization in signalling networks. Bioinform. 31 (20) (2015)
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg
One feature doesn't fit all: characterizing topological features of targets in signaling networks. BCB (2014)
Junjie Wang, Lisa Tucker-Kellogg, Inn Chuan Ng, Ruirui Jia, P. S. Thiagarajan, Jacob K. White, Hanry Yu
, with Negative Feedback through PPM1A Upregulation. PLoS Comput. Biol. 10 (6) (2014)
Yuan Shi, Gregory Mellier, Sinong Huang, Jacob White, Shazib Pervaiz, Lisa Tucker-Kellogg
Computational modelling of LY303511 and TRAIL-induced apoptosis suggests dynamic regulation of cFLIP. Bioinform. 29 (3) (2013)
Tri Hieu Nim, Jacob K. White, Lisa Tucker-Kellogg
SPEDRE: a web server for estimating rate parameters for cell signaling dynamics in data-rich environments. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Tri Hieu Nim, Le Luo, Marie-Véronique Clément, Jacob K. White, Lisa Tucker-Kellogg
Systematic parameter estimation in data-rich environments for cell signalling dynamics. Bioinform. 29 (8) (2013)
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, C. Forbes Dewey Jr.
STEROID: in silico heuristic target combination identification for disease-related signaling networks. BCB (2012)
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, Qing Zhao, C. Forbes Dewey Jr., Hanry Yu
In silico identification of endo16 regulators in the sea urchin endomesoderm gene regulatory network. IHI (2012)
Huey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg, Yingqi Wang, C. Forbes Dewey Jr., Hanry Yu
PANI: an interactive data-driven tool for target prioritization in signaling networks. IHI (2012)
Huey-Eng Chua, Qing Zhao, Sourav S. Bhowmick, C. Forbes Dewey Jr., Lisa Tucker-Kellogg, Hanry Yu
Pani: a novel algorithm for fast discovery of putative target nodes in signaling networks. BCB (2011)
Lakshmi Venkatraman, Hanry Yu, Sourav S. Bhowmick, C. Forbes Dewey Jr., Lisa Tucker-Kellogg
The Steady States and Dynamics of Urokinase-mediated Plasmin Activation. Pacific Symposium on Biocomputing (2010)
Anshul Nigham, Lisa Tucker-Kellogg, Ivana Mihalek, Chandra Verma, David Hsu
pFlexAna: detecting conformational changes in remotely related proteins. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S. Thiagarajan
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation. WABI (2007)

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Publication Activity (10 Years)

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Lisa Tucker-Kellogg